G50138 (nt5dc2,LOC108442396,LOC107745746,LOC107668043,LOC100380632,LOC107678756)


Basic Information

Item Value
gene id G50138
gene name nt5dc2,LOC108442396,LOC107745746,LOC107668043,LOC100380632,LOC107678756
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 6500149 ~ 6504331 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU67729
tagtatttgtttgtttatttattgagatTGACAAACCAAAGCACTGCAATGATTATCAAAATGAGAACAGATGTCTGTTCATACCTTTCAGGGCCACATTTATTCCTCACTTTGGAGAAAACACAAAGATCACCACATTTCATATAATGTGAGTGTACAGAATTCCTCACATTCCCTTAAAACAAAAGCTCTGTTCGCTTCCTTCACTTTACTTGACCCACATTATAAATGCTCCACATGCCCTTGTATTACAAAAGGGACCTTACAAAGtaataaaaaaggataaaagggGTAAACAAAACATTAGCAAATGCTACCATCATACTATAGCCATTGTCCACAGCTTTCCAGGTTAGAGAACAATGCGTTTGCAAACACGAGCAAAACACTTGCAGCTTTCTTCAGTTGCAGGTTTCAATTCCTTCAACGAGTTACACCATCCATCCTGTAACCAACGCCTGTAAACACTGAGAATGTAACGTAACAGAAGTTCCAAAAGGTTGGTGCAGTTTTGTCCAGCACACTAAATTAAATTGCAAAAGCCCCATCACCGTCCCCTAACTACATCATCATATACTGTAACACTAACTCTACACAGCAACCTCTACTGAAGGTCAGTCGGCAGTATTCGTTTGTGTGAGATTTTCTTCTGTTCCCAGCACTCGTATTCATGACACAACCCTGATCTCACCAGACGCTCACAGAACTTCTGTCTGTAAGCAGTACAACGTCCATAACTTTGTTCAAACTTGTGCGGTATGCAACAGCGACTCAAGCAGCCAGTTTAGCGAATGTGAGCCATCTCCTCCAGGAATGGCGTCTTCATGCAGCCGGTGCAGAGCTGGTCCATCCAGAGCGGGGCCTCGTGCTGCAGCGGCGTCCGGCGCGGGTAGAACGTGTAGGAGAGGTCGTAGTTTAGCAGGCAGCTGATAGAGGCCATGTAGAGGTCAGAGAAGCGGCACAGACGGCGGGAGAAGTAGGTGGGGTTGTGGCACGTACGAAAGATGCTGCCGAACTGGGGGTTGAACAGGTTTTTGGTGACAGCCCgaagctcctctctctctttcagccaGTCCTGAAGCACTTTCTTTGACTCGGGATCTCGATACAGCTGCATGCGCTCCAAAAGGCCAGTGAGAGCCTGCAGCCAGGTGAGACTCTGAGCGTACTGCTCTGTGTTCACCACCTTCGTCTCGACCTCCAGCTCAGGGACAATCGCACCAGTCCTCCAGCCATGACGTAGCATCAAGTCCTGCACAAATCAATTACAACAATGAATTCTATAAATACTAACTCTACTTCCAATGAAAGCCTCAACATactgtgtaaaatttacttttgttGCATAGCAACTACATAAGAAAATGTTTATCatgattatcattattattttggcATGCCTAACTACACCGCTTATTGTAGAATTAGTCTCTAGCTGCATATCCTAGAGCCAACACATAGTTATATTAGTATAGCACTGATAATTAG

Function

symbol description
nt5dc2 Predicted to enable 5'-nucleotidase activity. Is expressed in several structures, including immature eye; margin; paraxial mesoderm; tail bud; and yolk syncytial layer. Orthologous to human NT5DC2 (5'-nucleotidase domain containing 2).

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67729 True 1488 lncRNA 0.44 3 6500149 6504331

Neighbor

gene id symbol gene type direction distance location
LOC103043236 NA coding upstream 28061 6461543 ~ 6472088 (+)
LOC103037089 LOC108442388,LOC105023850 coding upstream 99316 6392824 ~ 6400833 (+)
LOC103046076 LOC103046076,LOC108442386 coding upstream 129134 6358495 ~ 6371015 (+)
LOC103046376 LOC103046376 coding upstream 145841 6350142 ~ 6354308 (+)
lhfpl5 lhfpl5,lhfpl5b,LOC107591869,LOC107745833 coding upstream 249546 6246229 ~ 6250603 (+)
LOC103041483 slc38a5,slc38a5b,LOC107745748,LOC107678718,LOC107549617,LOC107731265,LOC107668060 coding downstream 42238 6546569 ~ 6587345 (+)
was was coding downstream 85960 6590291 ~ 6601742 (+)
LOC103040567 gpr173,LOC108265110,LOC107549979,LOC107678674,LOC107731146,LOC107549585,LOC105898994 coding downstream 244068 6748399 ~ 6771061 (+)
c6h6orf226 NA coding downstream 294323 6798654 ~ 6800365 (+)
LOC103035560 NA coding downstream 437359 6941690 ~ 6960632 (+)
G50136 NA non-coding upstream 717 6499069 ~ 6499432 (+)
G50135 NA non-coding upstream 1141 6497994 ~ 6499008 (+)
G50092 tbc1d25 non-coding upstream 20157 6476575 ~ 6479992 (+)
G50071 rpl10a,LOC103141192 non-coding upstream 76797 6418784 ~ 6423352 (+)
G50051 mapk14a,LOC106572737,LOC108442382,LOC108265726,LOC105023895,LOC103368176 non-coding upstream 203800 6287836 ~ 6296349 (+)
G50172 NA non-coding downstream 192772 6697103 ~ 6730556 (+)
G50188 NA non-coding downstream 269068 6773399 ~ 6776899 (+)
G50195 suv39h1 non-coding downstream 278557 6782888 ~ 6788203 (+)
G50197 LOC108442380,LOC105898899,LOC107667993,LOC107549944,LOC108265139,LOC105418848 non-coding downstream 284541 6788872 ~ 6791697 (+)
G50224 LOC108412504 non-coding downstream 481205 6985536 ~ 6996194 (+)
G50063 NA other upstream 123444 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 710884 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 872697 5619159 ~ 5627452 (+)
G49475 NA other upstream 2253922 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 2260276 4199939 ~ 4239873 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 359025 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 479859 6984190 ~ 6984261 (+)
c6h9orf3 NA other downstream 1226353 7730684 ~ 7884058 (+)
G50568 NA other downstream 1703011 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 1765917 8270248 ~ 8278756 (+)

Expression


Co-expression Network