G50195 (suv39h1)


Basic Information

Item Value
gene id G50195
gene name suv39h1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 6782888 ~ 6788203 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU67806
actAGCATAAAAACTACAACTAAAACTTcagtaagaataaagaacactgggctcagagaacacagttagcATAAAACTATTCTTGGGAAACTATTGACTGAAAAGTGCATGATGCAACAATACTAAAAAACTGATGTGACCACAACAAACAATGAGGCATTTctcaaagagaaaaaataaaaataaaattcactCAGAGAGTCACAGAATGCAGAACTAAAACAGATATTTTCGGCAGTTCTCCGCTCCACACTTGCACTCCATGCGCATGCGTTTGATAGGAGTGTCCTGAATTCCTGCCAGGCTGAAGTTAGCATCCATTTTTGTGCTCTCTGCATCCAGCTCATCAATTGTCATTTTGTAGTCAAAAGTGAGCTCCTCCCCTGCTTTGATGGCTCGTGTTGCGAAAAATGCGATTCTGGGAAGGCGCTCATCTGAGTGTTCGATGAAAACGTTGTAAACCTGCAAGTTTGGATCGCAACTGTGGTTGACGAAGTGGGAGATGTTTCCACAACGTGCAGCATCCACTGTATAAACATCATCCACATAATCCAGATCGAATAGGTAAGTGACTCCCTGCTTATCGtatttctctcctctcctctccgcCTCCTCAGAGGTGATAATCTCTCCCAGGTACTCCATGACAAAGGAGTTCTTGTTTATCCTTTCAAGAGTGCGCACCCCCCAGCCTCTTCCGTTGGCCGTTTTAAAGATGCACAGGTCATACTGAATGCCCCTCTGCACCACCCTGTTACCACAGTCTGGCCCACAGGAGCATCTAGAGTTACACTCATAGATGGGCAGACCTGGCCTGACTTTGACTTGCCTGCTGTCATTATATGCGATTCGGTGGTCGGCAGCTCCTGCGCAGCATCCTTTTATGGAGTCTTTTATACAGTTTGTGCACTTGCAGCCCACCGCTGCCTGCCTGGCCTTCACCCCTTTCTCGATCTTATAGTCACTGATGTACATAAAGTCTGTGGGAGGTCCGTCCATGTCCACCTCATTCAGAACGAAGATTCGACCTTTGTGCTTGCAGGTCCGGTTAAGCTGCTCCTCCCAGCGGAGAAGTTTTAGGCGCTGCTTGGCTTTCTGGAGGAGGAAGGAAGCAGAAGGTGCATCCAGTGATGTGGCGTTTAGCGGCCTATTGGCCAGAAGCAGCGCTAAACGCAAGTCTCGTCGAAACTGTCGGAGCATTCTCGGGCATCTGAGGTTTTTGTGAGGTTCCCATGTGTTCTCAGCCTCCGAGTAACCTTTCCACTTCACCAGGAAAAACTCCTGATCCTTGAATTTTCTGTAGTTACATAAGTACTCCACCTCGTAGTCATTTAAGTTGTCTCTGGTCACATTCAGCTGCTGGCACACTAATCTCTGTCTGCGACACAGAGCCCGTAGGTCATCTCCAGTGTGCTTACAAGGAACTCTGCAATCTTTTAAATATCGCGCCATGTCTTCCTCTGCAGGCTGAAGGAGCCAGCATGAGCACGCAGcagtcagggttgccaggtccactaaaaatatccagcccaaagtcagtcgAAAACCagcccttcagaagcttaaactaccccaaaatatatgtctgtc

Function

symbol description
suv39h1 Enables histone methyltransferase activity (H3-K9 specific) and protein N-terminus binding activity. Involved in rDNA heterochromatin assembly. Acts upstream of or within cellular response to DNA damage stimulus; cellular response to hypoxia; and negative regulation of transcription by RNA polymerase II. Located in nucleus and rDNA heterochromatin. Part of chromatin silencing complex.

NR:

description
histone-lysine N-methyltransferase SUV39H1-A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67806 True 1590 lncRNA 0.47 6 6782888 6788203

Neighbor

gene id symbol gene type direction distance location
LOC103040567 gpr173,LOC108265110,LOC107549979,LOC107678674,LOC107731146,LOC107549585,LOC105898994 coding upstream 11827 6748399 ~ 6771061 (+)
was was coding upstream 181146 6590291 ~ 6601742 (+)
LOC103041483 slc38a5,slc38a5b,LOC107745748,LOC107678718,LOC107549617,LOC107731265,LOC107668060 coding upstream 195543 6546569 ~ 6587345 (+)
LOC103043236 NA coding upstream 310800 6461543 ~ 6472088 (+)
LOC103037089 LOC108442388,LOC105023850 coding upstream 382055 6392824 ~ 6400833 (+)
c6h6orf226 NA coding downstream 10451 6798654 ~ 6800365 (+)
LOC103035560 NA coding downstream 153487 6941690 ~ 6960632 (+)
LOC103037743 LOC108437573,LOC107549481,LOC107668067,LOC107731205,LOC107745762 coding downstream 238446 7026649 ~ 7039636 (+)
LOC103034603 NA coding downstream 335645 7123848 ~ 7130581 (+)
LOC103033640 LOC108437579,LOC108265805,LOC107731248 coding downstream 453922 7242125 ~ 7336833 (+)
G50188 NA non-coding upstream 5989 6773399 ~ 6776899 (+)
G50172 NA non-coding upstream 52332 6697103 ~ 6730556 (+)
G50138 nt5dc2,LOC108442396,LOC107745746,LOC107668043,LOC100380632,LOC107678756 non-coding upstream 278557 6500149 ~ 6504331 (+)
G50136 NA non-coding upstream 283456 6499069 ~ 6499432 (+)
G50135 NA non-coding upstream 283880 6497994 ~ 6499008 (+)
G50197 LOC108442380,LOC105898899,LOC107667993,LOC107549944,LOC108265139,LOC105418848 non-coding downstream 669 6788872 ~ 6791697 (+)
G50224 LOC108412504 non-coding downstream 197333 6985536 ~ 6996194 (+)
G50227 NA non-coding downstream 214886 7003089 ~ 7082346 (+)
G50253 NA non-coding downstream 278672 7066875 ~ 7072486 (+)
G50258 NA non-coding downstream 289030 7077233 ~ 7080141 (+)
G50063 NA other upstream 406183 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 993623 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 1155436 5619159 ~ 5627452 (+)
G49475 NA other upstream 2536661 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 2543015 4199939 ~ 4239873 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 75153 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 195987 6984190 ~ 6984261 (+)
c6h9orf3 NA other downstream 942481 7730684 ~ 7884058 (+)
G50568 NA other downstream 1419139 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 1482045 8270248 ~ 8278756 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_01055064_01058564 SUV39H1A coding CI01000010 null 1055064 ~ 1058788 (+)