G50227


Basic Information

Item Value
gene id G50227
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 7003089 ~ 7082346 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU67848
AGGTGATTTAAGTCAAGGCTATATTTGATTGTTGTGctgtatttatttcaaatttaaactaatatttgaattattttgtgGGTTTGAAGAATCACTTCACTCGTATCTCATTTCAAATATGGTTTTTATTGAACTAAAAGTgattcttctatggcatcactcaaaaaccatttaaagcacctttatttttcagaGCCTACATCTCACAAAACAACAGTTCAGAAATTTCATATGACTCACGACATACCGTCCATAACGAATTAAAACCTTAAACATAAACAGTAACATTTACTGCAAGGACCCTCCCCTCTACTCTCAAAGCTGCAGAAAATGGGTTTTGTTTTCTGATTTAGAAGCTGCATGTATGAACATCATTTACTGTCTCAACTCTGCCGACTGACCAACTGACCTAGTCCTGTTTTAACACTGAGGAGTAAACAGCAATTAAAAGGCATGGCTTtccccagaaaaaaaacaacttccAACTACCACAGGCAAATTTACTCACAATCAACATTACCTCTTGGCTTAAGGGTCTCAAGTGACCACAAAGATGGGGAGGGGGCACCCTAGTAAACCAGTCACATGACACAAGGATCAAGAACACTATAATAAATATGAGCCAACAATTACAAagtaaaaatgcacaaaatatacatatactgtacatacacacagcgtgtgtatattgtatatctATATAAAAACCGTTCGATTTTTCCTTCCTTCTTACATATACATTTGGGTAGTAGAGATACGACAGACCaacaaaatgtgtttgtgtctgtatgTCCCTTACAGTATGAGATGAGGGATATTACAAAGCCAAAAGAGCAATAACAATAAGACCAATGCTAAGACTCAGAACATGCCGTAAAGTCTAAGAAGGACCAAATAGCCTAAAAAGGCTACGCTAGTACAACATACCCacacacacacacacacacg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67848 True 948 lncRNA 0.36 2 7003089 7082346

Neighbor

gene id symbol gene type direction distance location
LOC103035560 NA coding upstream 42457 6941690 ~ 6960632 (+)
c6h6orf226 NA coding upstream 202724 6798654 ~ 6800365 (+)
LOC103040567 gpr173,LOC108265110,LOC107549979,LOC107678674,LOC107731146,LOC107549585,LOC105898994 coding upstream 232028 6748399 ~ 6771061 (+)
was was coding upstream 401347 6590291 ~ 6601742 (+)
LOC103041483 slc38a5,slc38a5b,LOC107745748,LOC107678718,LOC107549617,LOC107731265,LOC107668060 coding upstream 415744 6546569 ~ 6587345 (+)
LOC103034603 NA coding downstream 41502 7123848 ~ 7130581 (+)
LOC103033640 LOC108437579,LOC108265805,LOC107731248 coding downstream 159779 7242125 ~ 7336833 (+)
LOC103033322 LOC108437580,LOC107731173,LOC108266008 coding downstream 268323 7350669 ~ 7485744 (+)
porcn porcnl,LOC108437582,LOC108265978,LOC107549961 coding downstream 474011 7556357 ~ 7571558 (+)
csde1 csde1 coding downstream 491236 7573582 ~ 7596577 (+)
G50224 LOC108412504 non-coding upstream 6895 6985536 ~ 6996194 (+)
G50197 LOC108442380,LOC105898899,LOC107667993,LOC107549944,LOC108265139,LOC105418848 non-coding upstream 211392 6788872 ~ 6791697 (+)
G50195 suv39h1 non-coding upstream 214886 6782888 ~ 6788203 (+)
G50188 NA non-coding upstream 226190 6773399 ~ 6776899 (+)
G50172 NA non-coding upstream 272533 6697103 ~ 6730556 (+)
G50439 NA non-coding downstream 857255 7939601 ~ 7942748 (+)
G50535 NA non-coding downstream 963355 8045701 ~ 8046053 (+)
G50550 NA non-coding downstream 1019729 8102075 ~ 8102287 (+)
G50565 NA non-coding downstream 1120091 8202437 ~ 8203419 (+)
G50580 NA non-coding downstream 1220170 8302516 ~ 8302910 (+)
trnae-cuc NA other upstream 18828 6984190 ~ 6984261 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other upstream 61111 6863356 ~ 6941978 (+)
G50063 NA other upstream 626384 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 1213824 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 1375637 5619159 ~ 5627452 (+)
c6h9orf3 NA other downstream 648338 7730684 ~ 7884058 (+)
G50568 NA other downstream 1124996 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 1187902 8270248 ~ 8278756 (+)
G50583 LOC108437602,LOC103398889 other downstream 1260594 8342940 ~ 8344514 (+)
G50889 grid2,LOC107556295 other downstream 2561028 9643374 ~ 9782721 (+)

Expression


Co-expression Network