G50258


Basic Information

Item Value
gene id G50258
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 7077233 ~ 7080141 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU67882
ctttatttacatttttagagtGTCATATGAAAGGAATGCATATATACACAATGTGAAACAATTTAAGTGGGGCGTTGGGACATGTCCTCAGGGTGAAAGTCAGTACAgatgtacattttttaatatttttgaaagTAAAAAGCCTGAGATGTACTTTTAGAcagattattacattatattcacACATTTCTTACAGTAAAAACACTTGCTTTTAGGGATGTCCCGGTCCAATCCAGGTATATTTTAAAGGGTTGTGTATTGACTACTTTAATTCCAGTCCAGTTTTAAAGCTATATTACATCCACAGTGTTAAGAGAGTCATCTGGTGTCCTCAAAGTGCCATTAACAGAAATTACTGCCCAGCCGGCGGCACTGAGGAGAGTATTCAGAGGGTAAATTAATGAGTTTAGTTAGAGACTGCAGCAtggaaatattttacattggAGCAATGAAACGTAACATAATatctgaaaatatataaaactttcACCTAAACACTCTTTTTTACTGTCAGGAAGACTACACACAATTCTTTGTTTTAATCCACCACTGAATAGTACATTTATAAGCGAGTGGAGGTTAACACTGATGCTAATATACACACATTCTATAGAACTCCCAAATCATAGCACACTCACTTCACTATATAACAGTTATTTCATATCAGTCCACAGAATGTTTGATTATATGAacttttactaaacataaagtgattttatttcaccACCACATTTATGGAAGCTCAGCATTAAGAGTCTCTAATTGAATTGGACAAAATAACCTGCTTGTCTCAGGACATCCCTACTTGTAGTACTTGTAGTATAGTATTATAACCATTACACAATGCATTTTTTACAGATCTGGTTTTAATTGTCTTTAGCATGACTTGGCTTTGAAAGGAATTCAAAAAGAAGGAAGtggcttttaaaaagccattatgAAGCAGTGAATGTTCAGTATGCATGGTGTGACCATACCCATTATGTAATGTTGAATTCCTATAATGTTCCCATGTCACAAAAGTGAAAAATGGCCTGTAACATATGTACATTATAAAGTCTCCAAACTGGTTTTTGGGTGTGTGGTAACAGAAAAACACGAACTAATCTAATAAGCTTTGCATTATGAGGAGGTTTGtcaaatttttaaaaagattctgcacattaatacacttaatattaatacaaaaatgttttaaaacccaGAGAGGTTCTTCTATGGAAGCACTCCACAGAAGCCTTTATTTTTtgcacctttattttatttttttatttaagagtgTATTAACTTCCTGCACTGTGTGTAGCCAtgtttaataaactcatttagcCCAATCTAATCCAAAGCATTCATACAGCGACAGCCTCCGAACAATGGAAGCCCTGCCCTAATGAGCTTGTTTGCACTGCCGCTTTCTTCCATTGTGCTCTAATACACTATAAACCTGACATTATCTGGTCGGATGTGGTGCCTCTGCCAGGCAAGCCTGGGCTTGTGCTTCATTTTTGGACGATTGCGCTCTATGTAGTCTGTCATCTCCTTCCATCCGCCTCCCAACTGACACTTGTCTCTCTGGGGGTTTCTGCACTTGTACACTGGGTTCTTGTGTGAAGTGTCAAAACACATACCGACAGTTCTTTGTGGCCAAAAGAAAAGTACTTGTTGACGTGGCACGGAAAAAACAACAGTCATTATTTCTTTAAAGGAAGCTGGCTCCAACTGGCTAGGATGAAAATGTGGGTGTAAGAAACGTCAATAACATATTGTATCGCAATAGTTTTTGTTCTGCAATACTgtatcagtttttaaaaacacggtattgatttataaatattaatttacagttgtaaagattggtgtcagaagtggtacATTCAGGGCAGTGTTGTACAGTGTTGTTacatcccactgttctgattagataaaaagtttatttttttgtttttataatattatctCAAATTTTCATAcccttttttccccaatttacacagccaattaccgaTCCCATTCACcaggactccccttatcactagtgatgccccaacacaaggaagacagacacatgtgaagtcagccaatgcctctttttgagctgctgctgctgcagcattgccaagtagcatcacagcgcactcagagggaagggcagcaactcggttctgatacatcagctcacagatgcctcttgctgagcgacatcaccctttggagcgatgtggggagagagcgccatgtacccatccagagagagccggtgatTTCCTGAACATAGAGACAGCACTTACCCTGCTGGACCATATGGAGCCCCAGATTTTATGAATttgatagtgtttttttttttctcaaatttgaTTGCAAAAATTGcttacagtattgtgatatattatgttatatgtattgtgaaacacattaacatatcGCCAAATTCTTCCCAATACACACAGCCCTACATGAATACTCCTGCCTCCCAGCTCTGCCGGTTAGAGTGCTGGATCCTTGTTCCTCACAGGGAGgctacattatacattatagaaTAGGGCACAACACAGAGAGCAAGGGGAGATTCAGGTTAGAGTCTTTGTTATTCTGCCTGCTGTTACAGATTCAGTGTTTTCTTCTCCGCTGTTCCTCTTGGTTTGAGATGGAGAAGGAGGTTGAGCTGCTAAAGCTGAAAGCTTACGCTGGTGCCTCCCCCGGTGGCCTGTGACAGTCTAAATCCAGAGGTCTCTCACTGCAGCCTCTTCGCTTCTTCCCCACATGCCTGGATGCCCTCTCGCAGCGCACTGAGCCTGGGAGAGGTGCCCACGCATGGCTGGGGCTATGACAGGTTCCTGAAAGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67882 True 2844 lncRNA 0.40 2 7077233 7080141

Neighbor

gene id symbol gene type direction distance location
LOC103037743 LOC108437573,LOC107549481,LOC107668067,LOC107731205,LOC107745762 coding upstream 37597 7026649 ~ 7039636 (+)
LOC103035560 NA coding upstream 116601 6941690 ~ 6960632 (+)
c6h6orf226 NA coding upstream 276868 6798654 ~ 6800365 (+)
LOC103040567 gpr173,LOC108265110,LOC107549979,LOC107678674,LOC107731146,LOC107549585,LOC105898994 coding upstream 306172 6748399 ~ 6771061 (+)
was was coding upstream 475491 6590291 ~ 6601742 (+)
LOC103034603 NA coding downstream 43707 7123848 ~ 7130581 (+)
LOC103033640 LOC108437579,LOC108265805,LOC107731248 coding downstream 161984 7242125 ~ 7336833 (+)
LOC103033322 LOC108437580,LOC107731173,LOC108266008 coding downstream 270528 7350669 ~ 7485744 (+)
porcn porcnl,LOC108437582,LOC108265978,LOC107549961 coding downstream 476216 7556357 ~ 7571558 (+)
csde1 csde1 coding downstream 493441 7573582 ~ 7596577 (+)
G50253 NA non-coding upstream 4747 7066875 ~ 7072486 (+)
G50224 LOC108412504 non-coding upstream 81039 6985536 ~ 6996194 (+)
G50197 LOC108442380,LOC105898899,LOC107667993,LOC107549944,LOC108265139,LOC105418848 non-coding upstream 285536 6788872 ~ 6791697 (+)
G50195 suv39h1 non-coding upstream 289030 6782888 ~ 6788203 (+)
G50188 NA non-coding upstream 300334 6773399 ~ 6776899 (+)
G50439 NA non-coding downstream 859460 7939601 ~ 7942748 (+)
G50535 NA non-coding downstream 965560 8045701 ~ 8046053 (+)
G50550 NA non-coding downstream 1021934 8102075 ~ 8102287 (+)
G50565 NA non-coding downstream 1122296 8202437 ~ 8203419 (+)
G50580 NA non-coding downstream 1222375 8302516 ~ 8302910 (+)
trnae-cuc NA other upstream 92972 6984190 ~ 6984261 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other upstream 135255 6863356 ~ 6941978 (+)
G50063 NA other upstream 700528 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 1287968 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 1449781 5619159 ~ 5627452 (+)
c6h9orf3 NA other downstream 650543 7730684 ~ 7884058 (+)
G50568 NA other downstream 1127201 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 1190107 8270248 ~ 8278756 (+)
G50583 LOC108437602,LOC103398889 other downstream 1262799 8342940 ~ 8344514 (+)
G50889 grid2,LOC107556295 other downstream 2563233 9643374 ~ 9782721 (+)

Expression


Co-expression Network