c6h9orf3


Basic Information

Item Value
gene id c6h9orf3
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 7730684 ~ 7884058 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU68103
CAAACCCACAGCCACAAAAAGCAGCACCCTCCAGAACTTTTTCCTGGTGTCTCTTTTATTCTATGTTGATTTATATAAGATATACTAGATGCTGGCTTCTGCTGGTGcacaagagtgtgtgtggattgttttttactattattaagcCTGGCACCAGTAGAACCTTTCCATCTTTGCCATTtcaggaataaataaatgatgcttcactgattgtagaaaactacatattatttattaatgaatttacatacatacatacatacatacatacttacaCATACAGGTGGTGATGTGGGAAACGTTGCAGTGTAAAGTCTCTTAATAATGTAAACAGTTATTAGGTTGGTTGTCGCAGGAAGCATcatgtgatataaaaaatttatTGGGGGGTAAATTTAAGCTCATAAaaacataaatatgAAGAAAGACATTTTTATGTTGCTTTTAGAGGCACCGCAATCTCCACATATCTGTTCAACCAACAGCACCACTGTAAACTGTTCAGACAGTGTAAGACCCTGTTTATACCAGGTCACTCcgtgtgttttaaatattattgtttttatctagATTTTAGATCTAGATAAAGCCAAaacaagtaaatgtaaaaacacttactttttaatacaaaataatacaaatccCTTTACTCAGATCACTTCAGTAGGTGAAGCATCTGAGAAGCGTCTGAGCCACATTATAGCAGTGTAAACTCATCAATCGTGCCCGAGACAGCATTGAACTTCTGCCTGAATAAACAGACACATTTTACTACCAAGTGTAAAAGTATATCAGGACACACACATTGACCTGGTATAAATGGGTTCTAAGTTTCTGTAGAGTGGAGCGCTACAACTTGGATAAACATTTTAGATTGGTGAAGGAAATCAGTGGAATCCCTTTTAAATGTGGTCCATCGATATTTTCACTGTCTGACGTTTTTGCTCAGCCTTAATTTGCATCACACATACCGACCACACTGATTGTTTTTCTAGGCTGATTGACCACATTTGGGGTAAGAGGAAAAGTATTCTTCTGTGTGTAATTTACATTTAGTTGACGTGTCTCTTTCCTGTGTTCACGCTGGTGCAGGGTTCGAGATCATCTCTGCAGTCTCAGGACTGGGTGTGGAAGCAGCTGACGGGGACCATCGGAAACACACGGATGCCTGAGGCTACGTCTGTTTGGATGAAGCTTCTGCTGTAAATGGAAACAAGATTagaagaaaataattaatatactttattatattaaatgcaGCTGGAACAGTAGACTACAGAGTACACCCGTACATCATACACCAGTCCAGAGATAAAAATCTGTGTAGCTCCTGTTCTCAAAGCTTCAGCAGAATCAGATAAATGGAAGCTGTTTGTGTTAAAAACAATGTGGCTGATATTttcatattaaacattttacctcAGGGGcactagcattgtcctgcagaTATCACCAGTATAACAACATTTAGAGGTCAGTTTCTGGTTTGTCCCtgctattatttatataaaaaaaagctactTTAATTCCACCTGTAAGAACGCTGTACCAATACGGCAGTAACAATCTACACAAACAGCACTATTTGTTAGTTTTATATTGAAATGTGAAATTACAGTTCTTCTACTTTgatgtcatttttttccagtttgtgTCTGCTCTGATTAGacttatttatagttatttgcTTAGTTTGACTGgcagtatttttactttttatattttatttggtcgttattaattttatgtttatttgttttatgtaattACTGAGACTTTGGACCAAAATGGTGCTACTccaataaagtttttttaatatttttagcaaaagagAAATGTTAAGTTGCACTTGGGTTATCATTACTGAGAACTAAAGCCTTACTAAAACTACTTTTCTGTTCCAAATCAGGGTATCCACACACTTTAATTTCAATGCAATTATTAAGTCTTTTAATACCTCTaacaggaaaaataaaacaataacttTGGTAAAAATCTTGACACTACAAATCTCATTTTCACTGTGATCATTTAGAAAAGGTTGATACTACATTCTACGCTAAAAAGAAATGAATGCCCCCAT
>TU68105
CAAACCCACAGCCACAAAAAGCAGCACCCTCCAGAACTTTTTCCTGGTGTCTCTTTTATTCTATGTTGATTTATATAAGATATACTAGATGCTGGCTTCTGCTGGTGcacaagagtgtgtgtggattgttttttactattattaagcCTGGCACCAGTAGAACCTTTCCATCTTTGCCATTtcaggaataaataaatgatgcttcactgattgtagaaaactacatattatttattaatgaatttacatacatacatacatacatacatacttacaCATACAGGTGGTGATGTGGGAAACGTTGCAGTGTAAAGTCTCTTAATAATGTAAACAGTTATTAGGTTGGTTGTCGCAGGAAGCATcatgtgatataaaaaatttatTGGGGGGTAAATTTAAGCTCATAAaaacatataaatatgAAGAAAGACATTTTTATGTTGCTTTTAGAGGCACCGCAATCTCCACATATCTGTTCAACCAACAGCACCACTGTAAACTGTTCAGACAGTGTAAGACCCTGTTTATACCAGGTCACTCcgtgtgttttaaatattattgtttttatctagATTTTAGATCTAGATAAAGCCAAaacaagtaaatgtaaaaacacttactttttaatacaaaataatacaaatccCTTTACTCAGATCACTTCAGTAGGTGAAGCATCTGAGAAGCGTCTGAGCCACATTATAGCAGTGTAAACTCATCAATCGTGCCCGAGACAGCATTGAACTTCTGCCTGAATAAACAGACACATTTTACTACCAAGTGTAAAAGTATATCAGGACACACACATTGACCTGGTATAAATGGGTTCTAAGTTTCTGTAGAGTGGAGCGCTACAACTTGGATAAACATTTTAGATTGGTGAAGGAAATCAGTGGAATCCCTTTTAAATGTGGTCCATCGATATTTTCACTGTCTGACGTTTTTGCTCAGCCTTAATTTGCATCACACATACCGACCACACTGATTGTTTTTCTAGGCTGATTGACCACATTTGGGGTAAGAGGAAAAGTATTCTTCTGTGTGTAATTTACATTTAGTTGACGTGTCTCTTTCCTGTGTTCACGCTGGTGCAGGGTTCGAGATCATCTCTGCAGTCTCAGGACTGGGTGTGGAAGCAGCTGACGGGGACCATCGGAAACACACGGATGCCTGAGGCTACGTCTGTTTGGATGAAGCTTCTGCTGTAAATGGAAACAAGATTagaagaaaataattaatatactttattatattaaatgcaGCTGGAACAGTAGACTACAGAGTACACCCGTACATCATACACCAGTCCAGAGATAAAAATCTGTGTAGCTCCTGTTCTCAAAGCTTCAGCAGAATCAGATAAATGGAAGCTGTTTGTGTTAAAAACAATGTGGCTGATATTttcatattaaacattttacctcAGGGGcactagcattgtcctgcagaTATCACCAGTATAACAACATTTAGAGGTCAGTTTCTGGTTTGTCCCtgctattatttatataaaaaaaagctactTTAATTCCACCTGTAAGAACGCTGTACCAATACGGCAGTAACAATCTACACAAACAGCACTATTTGTTAGTTTTATATTGAAATGTGAAATTACAGTTCTTCTACTTTgatgtcatttttttccagtttgtgTCTGCTCTGATTAGacttatttatagttatttgcTTAGTTTGACTGgcagtatttttactttttatattttatttggtcgttattaattttatgtttatttgttttatgtaattACTGAGACTTTGGACCAAAATGGTGCTACTccaataaagtttttttaatatttttagcaaaagagAAATGTTAAGTTGCACTTGGGTTATCATTACTGAGAACTAAAGCCTTACTAAAACTACTTTTCTGTTCCAAATCAGGGTATCCACACACTTTAATTTCAATGCAATTATTAAGTCTTTTAATACCTCTaacaggaaaaataaaacaataacttTGGTAAAAATCTTGACACTACAAATCTCATTTTCACTGTGATCATTTAGAAAAGGTTGATACTACATTCTACGCTAAAAAGAAATGAATGCCCCCAT
>XM_022671090.1
GTTTATAGCTCTACTGCGTGGCGCGCGAGAGTGGCGTCACTGCGTAGTGAGCAGCGCGTGCTAGGCGGCTGCAGCAGTTGCTATAGTGTATCTGGGAGCAGCAGCGCAGCGGCGGGACTGTTTGTTTGTGGAAGCTGCTGGTTGCGTGTttctctctgttaactggtttaGCGTCCTCAGCTCAGCAGCCTGACCCTCAGTCTTTAACTCACACACGGCAGCAGAGTATCACACAGAACGGCGGGGTAACGACACGGCGGCTGCGGGCAGAAACGGAGGAGAAACAGCGGGGGAAAGTTGGGGCTAATGTTCAGCAGGTGTTGAGCTGTACacgttctgctgctgctggagataCGAGGATGCTCACAAGACTGGATAATAGAGACACCAAATGCTGCACTCTGAAATAATTGCCAGTGTTTACCATGAAATGAGTCTGGatgcatactgtaaataatataaatacactggaaaaaaaaactgacaatcCGACGCACTCAGTGATGCAGTCTACACAACAAAATGATCTGGACCCTAATAAAGATGACCTGCCTTTACGAGCCAACACAAACCACATGCTGGTCAGGCACTATGTCCTGGACCTGACTGTAGACATACAGAGGAAGGTCATTGGTGGCAGCATTGTCCTGTTTCTAGAGCCTGGAAAAGGAGCTGCTGGACTAAAGATCTCAGAAGTTCTACAAGCTCCAGATGTTGTTGGTGTGGAAAAAGAAGCCAGCTGTTCTGCCAGTGCTACACATGTACCTGGTGATGCAGCTCAAGAAAGGGATGTGTGTAGGTGGTCATGGGATGATGAGAGTGAGGACTTCAccctgatattggattgctgtGACCTGCTGGTGTCcaaggtggaggaggtggatgTGTCTAATGTGCCTGAGCTTAGGAAGCTTTTAGAAGGAGGTGAATCAGATGTGATCTCCAGCCAGCaattatcatttatattaatacaGAAACTAATATCTATACCTTCACACCAATGGAGACAACAGCAGGATCTATATCTCCAGTGCAGCTCTGCTCCCAGTGTCCATATTCAGGGTCTTCTCTTCCACATGGACCAGTGGAGCCTTCAAGTCAGGAAGAAAGGGGTGCGAACCCCATGTGACTTCCCTCGTATCCTCAGGATTTGTTATGAAACCAAATCTACCGGAGGCTCTGTGAGGTGGACTAAAGACCAGGATAACAGgTGCTGTGTTTACACCATGGGATCACCCATCAACAACAGAGCCCTCTTCCCATGCCAAGAACCACCAGTTGCAATGTCGACCTGGCGAGCACGAATAAAAGCCCCATGTGAATATACGGTTCTGCTAAGTGGTGAGAATCAGGCCTGCCCTATGCCCGAGGAGACAGGTTTCTTCCAATGGGATTATTTTGTTACAATGCCAATGCCTGCCTCCACTTTTACCATAGCAGTGGGCATGTGGAGGGAAGCCAGGGAAAAGGCTTCTAATCATGAGGAAGGGATGAATGAGGATGAGGAGCCCAGTGCAAAATTAGGCTGGTATGCCTACAAACCAAGCGGCGAGAACCAGAGCTCACCATCCAGGCTGACCTCTTCTGTTAAGGAGGAAGATGAGCAGAGCTTTTGCTCCCATGTGGATTATCCATGTCGTTTTGTTAACAACACCTCTAGGATGCAGGTCATCCTACCTCATCGAGTGTTTGCCCCATTCTGTCATCTGCAGAAGGTGGAGGCCTCTGTCCTGCCTCTCCTGCCCCTCTGTCTGGCTGCTGCTCACTCTGTTCTGGGTGTTCACCCGTTCTCACGCCTGGATGTGCTCATTGTTCCTCCTGGGTTCTCCAGTCTGGGCATGGCCAGCCCACACATTATCTTCCTGTCCCAGAGTGTGCTGGTGGGTGAGAGAGGCCTGTGTGGTGCGAGGATGTGCCATGAAATCGCCCACTCCTGGTTTGGCTTGGCCATTGGAGCGCGGGATTGGACGGAGGAGTGGATCAGCGAAGGCTTTGCCACCTACCTGGAGGACGTGTTCTGGGCCAAAGTCCAGCAGCTGGATCGCAGCGAGGAAGAGGAGCAGAGGCAGCTGAAGGCTTTCCTGCGTTGGAGGAGGCTGAAGGATGAGTTGGTGAACTCAGAAGAGGAGCTGCTGGTCCTCAGGCCCAATAAGGACAACACAGGAGAAGTCAGTGACTCTGGAGCCTCCATGGTGAAGCATGCCCTCAACCCTGGAAAACCGTTTATGCAAGTACACTACCTAAAGGGTTACTTTTTCCTGAAGTTCTTGGCGAGCAAAGTGGGTGAGGAGGAGTTCCTGTGTTTCTTCAGGGTTTTTGTGAGAAAATTCCATGGCCAGCTTATTTTATCTCAGGATTTCCTTCAGATGTTCCTGGATACGTTCCCAGCTTTGAGCAGCCAAGGCCTCACCCTTGAAGCTGTGTATTCGGACTGGCTGGATACACCTAGAATTCCGAAGTGGCTGGAAGAAATCAGCTCGACGTGGGCGCTCACTCGACCAGTGAAGGAGGTGAGAGAGGAGgttgTAAAATGGATGCTCgtgagtggtggtggtggagctGGAAAGGGCACCAAGCGGAAGAGAGCGGGGCCCAAGGTGAACTTCAAAGAGTTGAGTCCGGAGCAGCTGGTTCTGCTGTTGGAGTTTCTGTTGGAAGAGGAGGTGCTGAGTGTGTCCTGCCTCAGTCTGCTGCAGACAACATACAGCCTGCGTAACCAGGATGCAGAGgTGAAGCATCGGTGGTGTGAGCTGGTGGTAAAGCATAAATACACAGCTGCGTATAGAGACGTGGAGAACTTCCTCATTCATGACCAGGCTATGGGGGTCTATCTGTATGGTGAGCTGATGCTACAGGAAGACGGCCGTCAGCAGGCACTAGCACGACGCTGCCTGTCTGCCATCAAAGATGACATGGACCAATCAGCACGAAGCGTAGTGGAGGAAATGATCCTTTAGTGCTGGAAAAGAGCAGGGTTCGAGATCATCTCTGCAGTCTCAGGACTGGGTGTGGAAGCAGCTGACGGGGACCATCGGAAACACACGGATGCCTGAGGCTACGTCTGTTTGGATGAAGCTTCTGCTGTAAATGGAAACAAGATTagaagaaaataattaatatactttattatattaaatgcaGCTGGAACAGTAGACTACAGAGTACACCCGTACATCATACACCAGTCCAGAGATAAAAATCTGTGTAGCTCCTGTTCTCAAAGCTTCAGCAGAATCAGATAAATGGAAGCTGTTTGTGTTAAAAACAATGTGGCTGATATTttcatattaaacattttacctcAGGGGcactagcattgtcctgcagaTATCACCAGTATAACAACATTTAGAGGTCAGTTTCTGGTTTGTCCCtgctattatttatataaaaaaaagctactTTAATTCCACCTGTAAGAACGCTGTACCAATACGGCAGTAACAATCTACACAAACAGCACTATTTGTTAGTTTTATATTGAAATGTGAAATTACAGTTCTTCTACTTTgatgtcatttttttccagtttgtgTCTGCTCTGATTAGacttatttatagttatttgcTTAGTTTGACTGgcagtatttttactttttatattttatttggtcgttattaattttatgtttatttgttttatgtaattACTGAGACTTTGGACCAAAATGGTGCTACTccaataaagtttttttaatatttttagcaaaagagAAA

Function

GO:

id name namespace
GO:0044238 primary metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process

KEGG:

id description
K09606 C9ORF3; aminopeptidase O

RNA

RNA id representative length rna type GC content exon number start site end site
TU68103 False 2083 lncRNA 0.35 2 7880886 7884058
TU68105 False 2085 lncRNA 0.35 2 7880886 7884058
XM_022671090.1 True 3717 mRNA 0.48 17 7730684 7883811

Neighbor

gene id symbol gene type direction distance location
dock8 dock8 coding upstream 11691 7618199 ~ 7718993 (+)
lrif1 NA coding upstream 114701 7608880 ~ 7615983 (+)
apex2 NA coding upstream 122812 7603019 ~ 7607872 (+)
csde1 csde1 coding upstream 134107 7573582 ~ 7596577 (+)
porcn porcnl,LOC108437582,LOC108265978,LOC107549961 coding upstream 159126 7556357 ~ 7571558 (+)
ercc6l2 LOC107724913,LOC107689281 coding downstream 167632 8051690 ~ 8070806 (+)
slc20a2 slc20a2,LOC107594502,LOC107724891,LOC107669617,LOC107711867,LOC107602837 coding downstream 225764 8109822 ~ 8176783 (+)
LOC103033636 NA coding downstream 359824 8243882 ~ 8244724 (+)
LOC103034161 LOC108437597,LOC108437601,LOC108265423 coding downstream 370510 8254568 ~ 8257952 (+)
LOC103035131 LOC108437597,LOC108437601 coding downstream 375545 8259603 ~ 8262730 (+)
G50227 NA non-coding upstream 648338 7003089 ~ 7082346 (+)
G50258 NA non-coding upstream 650543 7077233 ~ 7080141 (+)
G50253 NA non-coding upstream 658198 7066875 ~ 7072486 (+)
G50224 LOC108412504 non-coding upstream 734490 6985536 ~ 6996194 (+)
G50197 LOC108442380,LOC105898899,LOC107667993,LOC107549944,LOC108265139,LOC105418848 non-coding upstream 938987 6788872 ~ 6791697 (+)
G50439 NA non-coding downstream 55543 7939601 ~ 7942748 (+)
G50535 NA non-coding downstream 161643 8045701 ~ 8046053 (+)
G50550 NA non-coding downstream 218017 8102075 ~ 8102287 (+)
G50565 NA non-coding downstream 318379 8202437 ~ 8203419 (+)
G50580 NA non-coding downstream 418458 8302516 ~ 8302910 (+)
trnae-cuc NA other upstream 746423 6984190 ~ 6984261 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other upstream 788706 6863356 ~ 6941978 (+)
G50063 NA other upstream 1353979 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 1941419 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 2103232 5619159 ~ 5627452 (+)
G50568 NA other downstream 323284 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 386190 8270248 ~ 8278756 (+)
G50583 LOC108437602,LOC103398889 other downstream 458882 8342940 ~ 8344514 (+)
G50889 grid2,LOC107556295 other downstream 1759316 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 2239662 10123720 ~ 10130801 (+)

Expression


Co-expression Network