G50550



Basic Information


Item Value
gene id G50550
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 8102075 ~ 8102287 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU68289
acgtgacgagacagacaacgggggaaggtgcaaagaccgaccgcaaacgtagactaacaggtactatttatactaaacatgaaacaatgaacacctggggagacaggtaacgaggggcggagctacaaattacacacacgtgatggaaaagtacaagagaaacacactaggaaacggggaaaacacaggaaaacatagcgagggcgtaacaat

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU68289 True 213 lncRNA 0.46 1 8102075 8102287

Neighbor


gene id symbol gene type direction distance location
ercc6l2 LOC107724913,LOC107689281 coding upstream 31269 8051690 ~ 8070806 (+)
dock8 dock8 coding upstream 383082 7618199 ~ 7718993 (+)
lrif1 NA coding upstream 486092 7608880 ~ 7615983 (+)
apex2 NA coding upstream 494203 7603019 ~ 7607872 (+)
csde1 csde1 coding upstream 505498 7573582 ~ 7596577 (+)
slc20a2 slc20a2,LOC107594502,LOC107724891,LOC107669617,LOC107711867,LOC107602837 coding downstream 7535 8109822 ~ 8176783 (+)
LOC103033636 NA coding downstream 141595 8243882 ~ 8244724 (+)
LOC103034161 LOC108437597,LOC108437601,LOC108265423 coding downstream 152281 8254568 ~ 8257952 (+)
LOC103035131 LOC108437597,LOC108437601 coding downstream 157316 8259603 ~ 8262730 (+)
LOC103034488 LOC108437599 coding downstream 161877 8264164 ~ 8269334 (+)
G50535 NA non-coding upstream 56022 8045701 ~ 8046053 (+)
G50439 NA non-coding upstream 159327 7939601 ~ 7942748 (+)
G50227 NA non-coding upstream 1019729 7003089 ~ 7082346 (+)
G50258 NA non-coding upstream 1021934 7077233 ~ 7080141 (+)
G50253 NA non-coding upstream 1029589 7066875 ~ 7072486 (+)
G50565 NA non-coding downstream 100150 8202437 ~ 8203419 (+)
G50580 NA non-coding downstream 200229 8302516 ~ 8302910 (+)
G50656 NA non-coding downstream 653358 8755645 ~ 8756009 (+)
G50770 NA non-coding downstream 842986 8945273 ~ 8946372 (+)
LOC107197475 NA non-coding downstream 902705 9004992 ~ 9006646 (+)
c6h9orf3 NA other upstream 218017 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 1117814 6984190 ~ 6984261 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other upstream 1160097 6863356 ~ 6941978 (+)
G50063 NA other upstream 1725370 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 2312810 5777052 ~ 5789265 (+)
G50568 NA other downstream 105055 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 167961 8270248 ~ 8278756 (+)
G50583 LOC108437602,LOC103398889 other downstream 240653 8342940 ~ 8344514 (+)
G50889 grid2,LOC107556295 other downstream 1541087 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 2021433 10123720 ~ 10130801 (+)

Expression



Co-expression Network