G50563 (smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429)


Basic Information

Item Value
gene id G50563
gene name smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 8270248 ~ 8278756 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU68306
GGTCTTTATTTAACAGGACACATTTATGTACATACAACAggaacatatatacagtacatcaaGACACTAATAAGCAAGTCCTATATAAAATCACAGGTTACATTCCAGTCTGGCAGTCTTGCACTTTCAGCCGGAGCGGagaaatgaatataaaaaaaaataataaggtaAACGTTacggtatctgtggtggttaaaaaaaaaataataaaaggggaaaaaaaaaaagaaaacctgagtTTCTCTGAAATGTATATTTCATCTTGTTACTGGTCATGCAGTTTACCACTGGTGTAAAGTAAACAAATCAAACACTGGCATTAGAAAGTAGTTGTGTTGCTCATATTGCACTGATTGAAATCAGTGGAGTGAAAAAGTCTAGGCAGGACCATCACATCATACTGTAATCCTTAAATGCGATACATCAAAGGCCCAGCGATGCCTTAAGCAGCTCTGCCATATCCTCAGTCATAGAGCCCTCATCATCTTCAGTAGTCATGTCTTGTTCAAGTTTGAGCTTTTCCTGGCCCACACGAAGCATGCAGGCCTCTATGGTGTCTTTGCTAACAAGTTTAATTACTTGTACAgacCTGGTCTGTCCCATTCTATGACAGCGGTCTTCTGCTTGTTTGTCATTGAAAGGATTGCAGTCAATATCATGGATGATCACTGTGTTAGCAGAGGCAAGGTTGATTCCCTGGCCTCCAGCACGAGTAGACAGTAGGAAGACAAATACCTCAGGGTCTGTGTTGTATTTGTCTATTAGgccaattCTTTCTGCCATAGGTATAGAGCCATCCAGTCGAACATACTCATGACCAAGGTGTTCCATCAGAACTTCTACAATGTCCAGCACCATAGTAAACTGGCTAAAGAGCACCACCCGGTCACCCTTCTCTTTGAGCTCAGCCAGGAGCCTGGTTAGCAGGGAGAACTTTCCAGAGTCCAAGAGGAGCTTCTTGTCCAGCTGGTAGCTGCTGATCGAGCTAAACTCCTTACAGAGGTTATGAAGCTCAAAGTCTGACATGACCTCCATATCTTCCTGGATCAGTGCAGGGTTTGCGTCAAAATGTGTTGGCTCCTTCAGCATGGCTTGACTCATTGCAGCAAGTTTCTCAGTGGTGTAGTACTGCCGATGCAGCAGAGGGTGATTGGCCATTTTCCTGAGTTGCATCATCACATTACAAAGATCACGCTTTTGTCCAGGGACAGCATTGCTCTTGGCCCTCTTCCAGAGTTCCTCGTAGAGCTGCTGTTGAGCATCACTCATGGGACACATTTCTATCTTCTCAAACTTGGCCGGAAGTTGTTTCAGCACCTCGCTCTTGACTCGTCTTAGGATGAAGGGCTTCATGATGAGCTTGGCTTGTGCAATACGCTCCTTATGGAAACTACTCTCCTCTTCTGATGATTTCGTGGAAAACATCTTTGAGATCTGTGAGGTGCTGCTAGAGAACATGGAGGGCATGATGAAGTTGAGCAGAGATATTAGTTCCAGCAGGTTGTTCTGTAGAGGAGTTCCCGTCAGCAGCAATCTGTGCTCAGCATTAATGGACATGAGATGGCGGTATCGCAGGGAGTTCATGTTCTTCAGCATGTGACCTTCATCAAACACTGCGTAATTCAGCTTCAACTTGCGAAAGAGACTGCGGTCATTTTCATTCCCTATAGTGAGGTTATATGTAGACACTATGACATTAAAGTCCACTCGACCGTTCAGAATGTCATGCCTGAGGTATTTACGGTCCTCCACAGAGCCATAGTAGACAATTACTTTGAGGCTTGGGCACCACAGCTCTAGCTCTCTCACCCAGTTATCCAAAGTGGAAGAAGGCACTGTAATAAGATGGGGTCCCTTATTCCCCTTCTGAAGGAGGTAAGCTAGGAAAGAAATGGCCTGAATTGTCTTTCCCAAACcCATTTCATCAGCTAGAATTCCACTTAGATTATGCTGGTGAAGGAGGATAAGCCATTTCAAGCCAATTAACTGGTACTGCTGCAATTTAAACTTTGGGTTGAGAACAGATGGTTGCTTCATTGAGCACGTGCCATTCTTAATGACCCCAGCGACATCTTTGGTCATCTTCTTGGCTATGCTTTCACATCGGCCCATGAGCTGCTTCAGcacctgtctctctttcagcaCCAACTTACATCCATCAACCAGGTCCATAGACAGGCCGTTAGCCCTAGAGAACGGctcattctgtgtgtgtgtgtgtgtgagtgtgtgagtgtgtgagtgagagagagagagagagagagagagagagagagagagaaa

Function

symbol description
smarcad1a Predicted to enable ubiquitin binding activity. Predicted to be involved in ATP-dependent chromatin remodeling and DNA double-strand break processing. Predicted to be located in site of double-strand break. Human ortholog(s) of this gene implicated in BASAN syndrome and adermatoglyphia. Orthologous to human SMARCAD1 (SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1).
smarcad1 Enables DNA binding activity. Involved in several processes, including DNA double-strand break processing; chromatin organization; and chromosome separation. Located in nuclear replication fork; nucleoplasm; and site of double-strand break. Implicated in BASAN syndrome and adermatoglyphia.

NR:

description
PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1A-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68306 True 2283 TUCP 0.45 15 8270248 8278756

Neighbor

gene id symbol gene type direction distance location
LOC103034488 LOC108437599 coding upstream 914 8264164 ~ 8269334 (+)
LOC103035131 LOC108437597,LOC108437601 coding upstream 7518 8259603 ~ 8262730 (+)
LOC103034161 LOC108437597,LOC108437601,LOC108265423 coding upstream 12296 8254568 ~ 8257952 (+)
LOC103033636 NA coding upstream 25524 8243882 ~ 8244724 (+)
slc20a2 slc20a2,LOC107594502,LOC107724891,LOC107669617,LOC107711867,LOC107602837 coding upstream 93465 8109822 ~ 8176783 (+)
hsd17b4 hsd17b4 coding downstream 697462 8976218 ~ 8995752 (+)
sema6a sema6a,LOC106585847,LOC106580184 coding downstream 806282 9085038 ~ 9203129 (+)
cdo1 cdo1,LOC102791980 coding downstream 1047944 9326700 ~ 9335342 (+)
tmed7 tmed7,LOC103042236,LOC102200599,LOC101168626,LOC100701005 coding downstream 1066882 9345638 ~ 9351678 (+)
catsper3 NA coding downstream 1074317 9353073 ~ 9354864 (+)
G50565 NA non-coding upstream 66829 8202437 ~ 8203419 (+)
G50550 NA non-coding upstream 167961 8102075 ~ 8102287 (+)
G50535 NA non-coding upstream 224195 8045701 ~ 8046053 (+)
G50439 NA non-coding upstream 327500 7939601 ~ 7942748 (+)
G50258 NA non-coding upstream 1190107 7077233 ~ 7080141 (+)
G50580 NA non-coding downstream 23760 8302516 ~ 8302910 (+)
G50656 NA non-coding downstream 476889 8755645 ~ 8756009 (+)
G50770 NA non-coding downstream 666517 8945273 ~ 8946372 (+)
LOC107197475 NA non-coding downstream 726236 9004992 ~ 9006646 (+)
G50818 NA non-coding downstream 925260 9204016 ~ 9204217 (+)
G50568 NA other upstream 49086 8207342 ~ 8221162 (+)
c6h9orf3 NA other upstream 386190 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 1285987 6984190 ~ 6984261 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other upstream 1328270 6863356 ~ 6941978 (+)
G50063 NA other upstream 1893543 6371520 ~ 6376705 (+)
G50583 LOC108437602,LOC103398889 other downstream 64184 8342940 ~ 8344514 (+)
G50889 grid2,LOC107556295 other downstream 1364618 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 1844964 10123720 ~ 10130801 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other downstream 2409129 10687885 ~ 10757255 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other downstream 3553925 11832681 ~ 11882021 (+)

Expression


Co-expression Network