G50565


Basic Information

Item Value
gene id G50565
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 8202437 ~ 8203419 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU68308
GCTCAACGCGAGTCACAGCCCCCTCCGCTGCTGCTCTCGAGAaggttgaaaagaagatggagaagtTTCAGCTTGCAGCTATGGAGAGTTCACCACGAAAAGAACGAAGTCAAAGAATACAAAGATCTGTCCATATTCTGAAGTCACCACTTGAAGAttttatgcagaattatttggattatgaataggaaccacattatttgcaacagcttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68308 True 215 lncRNA 0.42 2 8202437 8203419

Neighbor

gene id symbol gene type direction distance location
slc20a2 slc20a2,LOC107594502,LOC107724891,LOC107669617,LOC107711867,LOC107602837 coding upstream 25654 8109822 ~ 8176783 (+)
ercc6l2 LOC107724913,LOC107689281 coding upstream 131631 8051690 ~ 8070806 (+)
dock8 dock8 coding upstream 483444 7618199 ~ 7718993 (+)
lrif1 NA coding upstream 586454 7608880 ~ 7615983 (+)
apex2 NA coding upstream 594565 7603019 ~ 7607872 (+)
LOC103033636 NA coding downstream 40463 8243882 ~ 8244724 (+)
LOC103034161 LOC108437597,LOC108437601,LOC108265423 coding downstream 51149 8254568 ~ 8257952 (+)
LOC103035131 LOC108437597,LOC108437601 coding downstream 56184 8259603 ~ 8262730 (+)
LOC103034488 LOC108437599 coding downstream 60745 8264164 ~ 8269334 (+)
hsd17b4 hsd17b4 coding downstream 772799 8976218 ~ 8995752 (+)
G50550 NA non-coding upstream 100150 8102075 ~ 8102287 (+)
G50535 NA non-coding upstream 156384 8045701 ~ 8046053 (+)
G50439 NA non-coding upstream 259689 7939601 ~ 7942748 (+)
G50227 NA non-coding upstream 1120091 7003089 ~ 7082346 (+)
G50580 NA non-coding downstream 99097 8302516 ~ 8302910 (+)
G50656 NA non-coding downstream 552226 8755645 ~ 8756009 (+)
G50770 NA non-coding downstream 741854 8945273 ~ 8946372 (+)
LOC107197475 NA non-coding downstream 801573 9004992 ~ 9006646 (+)
G50818 NA non-coding downstream 1000597 9204016 ~ 9204217 (+)
c6h9orf3 NA other upstream 318379 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 1218176 6984190 ~ 6984261 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other upstream 1260459 6863356 ~ 6941978 (+)
G50063 NA other upstream 1825732 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 2413172 5777052 ~ 5789265 (+)
G50568 NA other downstream 3923 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 66829 8270248 ~ 8278756 (+)
G50583 LOC108437602,LOC103398889 other downstream 139521 8342940 ~ 8344514 (+)
G50889 grid2,LOC107556295 other downstream 1439955 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 1920301 10123720 ~ 10130801 (+)

Expression


Co-expression Network