G50568


Basic Information

Item Value
gene id G50568
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 8207342 ~ 8221162 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU68311
GTTCCATATACACAACAACCGCCCCGCTTCCTCCCGTTCTTGGCAGTCCGCACTCGCAATCTGAACTTCCCAAGTCCGTTCTTCACAAGTACGGGAGTACAGACTTGTGTACTTGTGTATTGAGAAACGGCCAAGGAGAGACACGAGAGCCATGACAACAAACAAaggagggggaaaaaacatGGAGGCTGAAGAAACAGGACAAGGGTGTGACACAGTGGCAGTGAAGCTCCGTATCAGCGCGGCTTCATCATTCATCAGATCTGCATCAGATCAGCGGGTCAGATCAGATCTGCTGGCCTGGCTGTGTGTGATCAGACTGGAGGAGGCGGaggagaacagcagcagcagcagcagcagatcagcCTCTTCTCCTTTATTGTTTCTCCCTCCAGACTTTTGTTCCccctctccttttctcctcctcctctgtatTCTCTGTACTTTCTCTCTTCCACAAAACTCACCAATAAAACCCAACCCAATAAAAACGTAACGCCTTTTGCCCCTCAACTCTTCTTGATATCTCGCTAGCACCTATTTCCACACCTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68311 True 554 TUCP 0.50 2 8207342 8221162

Neighbor

gene id symbol gene type direction distance location
slc20a2 slc20a2,LOC107594502,LOC107724891,LOC107669617,LOC107711867,LOC107602837 coding upstream 30559 8109822 ~ 8176783 (+)
ercc6l2 LOC107724913,LOC107689281 coding upstream 136536 8051690 ~ 8070806 (+)
dock8 dock8 coding upstream 488349 7618199 ~ 7718993 (+)
lrif1 NA coding upstream 591359 7608880 ~ 7615983 (+)
apex2 NA coding upstream 599470 7603019 ~ 7607872 (+)
LOC103033636 NA coding downstream 22720 8243882 ~ 8244724 (+)
LOC103034161 LOC108437597,LOC108437601,LOC108265423 coding downstream 33406 8254568 ~ 8257952 (+)
LOC103035131 LOC108437597,LOC108437601 coding downstream 38441 8259603 ~ 8262730 (+)
LOC103034488 LOC108437599 coding downstream 43002 8264164 ~ 8269334 (+)
hsd17b4 hsd17b4 coding downstream 755056 8976218 ~ 8995752 (+)
G50565 NA non-coding upstream 3923 8202437 ~ 8203419 (+)
G50550 NA non-coding upstream 105055 8102075 ~ 8102287 (+)
G50535 NA non-coding upstream 161289 8045701 ~ 8046053 (+)
G50439 NA non-coding upstream 264594 7939601 ~ 7942748 (+)
G50227 NA non-coding upstream 1124996 7003089 ~ 7082346 (+)
G50580 NA non-coding downstream 81354 8302516 ~ 8302910 (+)
G50656 NA non-coding downstream 534483 8755645 ~ 8756009 (+)
G50770 NA non-coding downstream 724111 8945273 ~ 8946372 (+)
LOC107197475 NA non-coding downstream 783830 9004992 ~ 9006646 (+)
G50818 NA non-coding downstream 982854 9204016 ~ 9204217 (+)
c6h9orf3 NA other upstream 323284 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 1223081 6984190 ~ 6984261 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other upstream 1265364 6863356 ~ 6941978 (+)
G50063 NA other upstream 1830637 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 2418077 5777052 ~ 5789265 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 49086 8270248 ~ 8278756 (+)
G50583 LOC108437602,LOC103398889 other downstream 121778 8342940 ~ 8344514 (+)
G50889 grid2,LOC107556295 other downstream 1422212 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 1902558 10123720 ~ 10130801 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other downstream 2466723 10687885 ~ 10757255 (+)

Expression


Co-expression Network