G50580


Basic Information

Item Value
gene id G50580
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 8302516 ~ 8302910 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU68332
tgtgacATGCGCATGCGCGGCAGCATGCTGTAGCACTCCACATGGCACCCGTCGTGACTGCCGTCGTTAAAGCAGAGAAAATgtccaaaatgtgtttttacagaTTCTTACTAATCATGTGCCTTATTGCACTACTAAAGGTGAACCAGGTGACTTCACTAAATATCAAAGACCGCTACAGGAAAGAGAGTGGCGTGATTTTCAGCGGGATGAAAGACTGTTTAGGAAAAATCTTGACACAAAGAGGCTAGATGAGAAACAGAAGTTCACACACACTGGGGATTTACAGAAATGGACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68332 True 298 lncRNA 0.45 2 8302516 8302910

Neighbor

gene id symbol gene type direction distance location
LOC103034488 LOC108437599 coding upstream 33182 8264164 ~ 8269334 (+)
LOC103035131 LOC108437597,LOC108437601 coding upstream 39786 8259603 ~ 8262730 (+)
LOC103034161 LOC108437597,LOC108437601,LOC108265423 coding upstream 44564 8254568 ~ 8257952 (+)
LOC103033636 NA coding upstream 57792 8243882 ~ 8244724 (+)
slc20a2 slc20a2,LOC107594502,LOC107724891,LOC107669617,LOC107711867,LOC107602837 coding upstream 125733 8109822 ~ 8176783 (+)
hsd17b4 hsd17b4 coding downstream 673308 8976218 ~ 8995752 (+)
sema6a sema6a,LOC106585847,LOC106580184 coding downstream 782128 9085038 ~ 9203129 (+)
cdo1 cdo1,LOC102791980 coding downstream 1023790 9326700 ~ 9335342 (+)
tmed7 tmed7,LOC103042236,LOC102200599,LOC101168626,LOC100701005 coding downstream 1042728 9345638 ~ 9351678 (+)
catsper3 NA coding downstream 1050163 9353073 ~ 9354864 (+)
G50565 NA non-coding upstream 99097 8202437 ~ 8203419 (+)
G50550 NA non-coding upstream 200229 8102075 ~ 8102287 (+)
G50535 NA non-coding upstream 256463 8045701 ~ 8046053 (+)
G50439 NA non-coding upstream 359768 7939601 ~ 7942748 (+)
G50258 NA non-coding upstream 1222375 7077233 ~ 7080141 (+)
G50656 NA non-coding downstream 452735 8755645 ~ 8756009 (+)
G50770 NA non-coding downstream 642363 8945273 ~ 8946372 (+)
LOC107197475 NA non-coding downstream 702082 9004992 ~ 9006646 (+)
G50818 NA non-coding downstream 901106 9204016 ~ 9204217 (+)
G50822 NA non-coding downstream 950263 9253173 ~ 9254126 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other upstream 23760 8270248 ~ 8278756 (+)
G50568 NA other upstream 81354 8207342 ~ 8221162 (+)
c6h9orf3 NA other upstream 418458 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 1318255 6984190 ~ 6984261 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other upstream 1360538 6863356 ~ 6941978 (+)
G50583 LOC108437602,LOC103398889 other downstream 40030 8342940 ~ 8344514 (+)
G50889 grid2,LOC107556295 other downstream 1340464 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 1820810 10123720 ~ 10130801 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other downstream 2384975 10687885 ~ 10757255 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other downstream 3529771 11832681 ~ 11882021 (+)

Expression


Co-expression Network