G50770


Basic Information

Item Value
gene id G50770
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 8945273 ~ 8946372 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU68536
TCTTTGAAATCATTCTGTATTTCACATATTAAAGTGGACTCATCTCCCACTGTATAAAGACTTCCATTTACAGTGCAAAGTGCAAAGATTAACAACGTCTTAAAAACCCACAAATGGTTCCGCACATTTTTATGGTTGTCTAATTTCAGCTGATCGTGTTCGTCTTTACACCTGGCATTTGGCTCAGAAGAGAATGAATACAGATGTAAAGGAAAAATGCCAAGAGGATGACTGTCATGTTTTTACCTACTTGATCTTTTCAGTTATGTTCCCAAAAGAGATACCAAGTATTTGTAACTGGGGTAAATGGTTTGCCACTATTGCACACaatctgcaacaaaataaataacatttctggAAACAGAACAGTGGTATCACGCTATTCATGTCTTAGGGGGTACATGTACTTTATAAAATAGCACATTTATACACTTGCgagccactttattggaaacaactACCTTATATATCCACCTAGCTGGTGCACAGTCATAGACTATAGCTTATATACAATGACATATCAAAAGCTAGAGCTGCTTgtatgtttgcatggacaattctaaaTGCTAAATGGTCAATGCAACCCACTGCaatgtccactgtgggtggtaatgccttctgtatTGTTGGCTATGTTAAACCAATTCACATGCGATTCTTTAGagtgaaaaatgttaaaagccCACAAAACCTCAAAAACAGAATGTCCTATTTATCTGGCAACCACTGTCATGACTTCTAGCATGCCATAGTATGCTACACTGCTCTCTACAGAGCTGCTCTTGGCTGGATTTTGAATGGTGGACCACCCTCATCCACACCAGAGAAACTGACCTGTTAAAAGCCCCTGCAGCCCCGCTGTGCTTGATACACTCAGGTTTTACCTTGTCAGTGTCCCTGCTGTTCTGGGAATAGCCCACCAgaaactgaccaaaataaatggACTAGAGCGCAGGGGTGTCCACACTTATCCGCCAAGGGGTGTTGTGGCTGCAGTTTTCATTCTAAACCATTCTTCAAACAACAGCACACCCGATTCCTCTTGTGTAATCAATATGTCAGTCTTCAAACAACTGATGACAATATGGATTGATTGACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68536 True 1100 lncRNA 0.40 1 8945273 8946372

Neighbor

gene id symbol gene type direction distance location
LOC103034488 LOC108437599 coding upstream 675939 8264164 ~ 8269334 (+)
LOC103035131 LOC108437597,LOC108437601 coding upstream 682543 8259603 ~ 8262730 (+)
LOC103034161 LOC108437597,LOC108437601,LOC108265423 coding upstream 687321 8254568 ~ 8257952 (+)
LOC103033636 NA coding upstream 700549 8243882 ~ 8244724 (+)
slc20a2 slc20a2,LOC107594502,LOC107724891,LOC107669617,LOC107711867,LOC107602837 coding upstream 768490 8109822 ~ 8176783 (+)
hsd17b4 hsd17b4 coding downstream 29846 8976218 ~ 8995752 (+)
sema6a sema6a,LOC106585847,LOC106580184 coding downstream 138666 9085038 ~ 9203129 (+)
cdo1 cdo1,LOC102791980 coding downstream 380328 9326700 ~ 9335342 (+)
tmed7 tmed7,LOC103042236,LOC102200599,LOC101168626,LOC100701005 coding downstream 399266 9345638 ~ 9351678 (+)
catsper3 NA coding downstream 406701 9353073 ~ 9354864 (+)
G50656 NA non-coding upstream 189264 8755645 ~ 8756009 (+)
G50580 NA non-coding upstream 642363 8302516 ~ 8302910 (+)
G50565 NA non-coding upstream 741854 8202437 ~ 8203419 (+)
G50550 NA non-coding upstream 842986 8102075 ~ 8102287 (+)
G50535 NA non-coding upstream 899220 8045701 ~ 8046053 (+)
LOC107197475 NA non-coding downstream 58620 9004992 ~ 9006646 (+)
G50818 NA non-coding downstream 257644 9204016 ~ 9204217 (+)
G50822 NA non-coding downstream 306801 9253173 ~ 9254126 (+)
G50841 ap3s1 non-coding downstream 362888 9309260 ~ 9324163 (+)
G50886 NA non-coding downstream 668156 9614528 ~ 9622057 (+)
G50583 LOC108437602,LOC103398889 other upstream 600759 8342940 ~ 8344514 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other upstream 666517 8270248 ~ 8278756 (+)
G50568 NA other upstream 724111 8207342 ~ 8221162 (+)
c6h9orf3 NA other upstream 1061215 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 1961012 6984190 ~ 6984261 (+)
G50889 grid2,LOC107556295 other downstream 697002 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 1177348 10123720 ~ 10130801 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other downstream 1741513 10687885 ~ 10757255 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other downstream 2886309 11832681 ~ 11882021 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other downstream 3137708 12084080 ~ 12129300 (+)

Expression


Co-expression Network