G50822


Basic Information

Item Value
gene id G50822
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 9253173 ~ 9254126 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU68599
tgctttaatacacattgatacacacatacaaaacattATCAATTATTAACGTAATGAAAGTTTGGTCCTTGATTGCCACAGTGATTGTAGCACAGAAACAGTTCTCTGCAAGATTACATGGTACAGGGCAGAAATCATGTAAtgcaaattaaataattcatgtCATGTTACAACTTGCTTGATACAAAAGGAAAAATTAATTGCTCTACTTTTTCATGTTAGTataattatattcatattataattaaatgctGTATTAATGACTTCTTAGGGAATCTGGTCAAAATTTATATAACAGAACAacatattgtataatattgcaattatattttttctcaatATCAGGCAACCCTACTTTACATTAAAGCCATTTAACGCAGGCACTCCAGTACACTTAGTAACTGATCAAGAGTGTGacttcacactctcacacttttTAAGTGACGAAACTTCGAGCTGCATGTGATGATGGGGAGCTTTAGGCGAGCATGTACTTTCATGATTATCATTCCTGCACTCTGCTACGGAGTAAAGACACAGTAAATAGATTCTGACCATTGCACAGTTTAGGGATCCAAAAAGGAGAACTGCTTGAGGCAAGGTCTGTGCTCTGATTCAAATCTGCAGCAGAGCACCTCATTCATACAGAGGAggactatacacacacacaatccacgCAATTTAGACCACAGACTGTTAGTGCATGAGGTGACAATTaatgaaagtgagagaaaaactGTGGTTATCATCTATTTTTAGACTTTATAGACTTTAGATCAAACTTACAAAAGATAACAATGGGAAATAATGGGGTTTGCTCTCACGAAGGTCAGCAGGAACATCAAGTAAGGGAGTCCAGCTGAGCCTGAATCGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68599 True 875 lncRNA 0.36 2 9253173 9254126

Neighbor

gene id symbol gene type direction distance location
sema6a sema6a,LOC106585847,LOC106580184 coding upstream 50044 9085038 ~ 9203129 (+)
hsd17b4 hsd17b4 coding upstream 257421 8976218 ~ 8995752 (+)
LOC103034488 LOC108437599 coding upstream 983839 8264164 ~ 8269334 (+)
LOC103035131 LOC108437597,LOC108437601 coding upstream 990443 8259603 ~ 8262730 (+)
LOC103034161 LOC108437597,LOC108437601,LOC108265423 coding upstream 995221 8254568 ~ 8257952 (+)
cdo1 cdo1,LOC102791980 coding downstream 72574 9326700 ~ 9335342 (+)
tmed7 tmed7,LOC103042236,LOC102200599,LOC101168626,LOC100701005 coding downstream 91512 9345638 ~ 9351678 (+)
catsper3 NA coding downstream 98947 9353073 ~ 9354864 (+)
fem1c fem1c,LOC106580179,LOC107728259 coding downstream 103641 9357767 ~ 9364491 (+)
ccdc112 ccdc112 coding downstream 125000 9379126 ~ 9385691 (+)
G50818 NA non-coding upstream 48956 9204016 ~ 9204217 (+)
LOC107197475 NA non-coding upstream 246527 9004992 ~ 9006646 (+)
G50770 NA non-coding upstream 306801 8945273 ~ 8946372 (+)
G50656 NA non-coding upstream 497164 8755645 ~ 8756009 (+)
G50580 NA non-coding upstream 950263 8302516 ~ 8302910 (+)
G50841 ap3s1 non-coding downstream 55134 9309260 ~ 9324163 (+)
G50886 NA non-coding downstream 360402 9614528 ~ 9622057 (+)
G50887 NA non-coding downstream 360477 9614603 ~ 9617381 (+)
G50901 NA non-coding downstream 467219 9721345 ~ 9733234 (+)
G50907 NA non-coding downstream 545845 9799971 ~ 9803653 (+)
G50583 LOC108437602,LOC103398889 other upstream 908659 8342940 ~ 8344514 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other upstream 974417 8270248 ~ 8278756 (+)
G50568 NA other upstream 1032011 8207342 ~ 8221162 (+)
c6h9orf3 NA other upstream 1369115 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 2268912 6984190 ~ 6984261 (+)
G50889 grid2,LOC107556295 other downstream 389248 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 869594 10123720 ~ 10130801 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other downstream 1433759 10687885 ~ 10757255 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other downstream 2578555 11832681 ~ 11882021 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other downstream 2829954 12084080 ~ 12129300 (+)

Expression


Co-expression Network