G50886


Basic Information

Item Value
gene id G50886
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 9614528 ~ 9622057 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU68702
ataaactaatagtacgtaaaccatttataaaccctttataaaggtagtcttattttaaagtggttccgACTTttcttttggccaggcagtgtacaaTACCCAtgttataaaataattcaaagttAGAaccatttaaagtttaaagtctAGTGCTAATAGGGGTTTAAGATAATATTGATACACTTAAGAATTgcaattttatgtatttttgcgatacttaaaaaaaaagaaagctcaTCTATcggtttaattaacattaaacccagcgtaaaaaaatacaaatactttgttctaGGTTAATGAAGGGAAAATCAAACTATAAATACATCCCACAAAATTGGTCTGGGATAGGATTTAACATGtaaaaattggtgtcagaaaGTGATTCATTTAGTcttttgtaaaacaaaatatatttaggcaATATAACCCCTATATTGTTAACAGtaacacaatatattgcaatatattggaTTTTAAGCTCTGTGTGGTGATATTGTAGTATTGTATCACCAGATTATTGATGATAAACAGCCCTAATTTCTTAGACATTTAGACAGAATAATCAATAAACCAACAAACTAATCGAAAAAACAATCATTAGGCTAATTGACAAAAAGATAATTAATAGGTGCAGCCATAGAgatgtatgtaaatataaagGACATTTTAAAGGTTCCAAATGTCTTATTATTGAACCAAAAGTGTTTCTTTTATATTCTTCTATCACTtaaaagaaccatttaaaataattccAATTATTCCTATTAAGAGTTTTTAAGAAGACACCTTGCAAAGTAACTCTCCCAATATAGAAATAAGCTGTTCGGTAACACTTTTGTGTCATGAATGTCATGTCTATTAGGCTGTATTAACATACTCATAACCgtaatataatgcatttataaggcattataaacctggctataaatagtaataaatatgtataactaTTAACTCAGTACAGGCATTatgttattatgcattatgagtTGTGATTATAGTGCatcataagctgtgcttataatatgttGCACATCAGGGTTAAATTATCATATATCTGTCACTATTAATATATTCCCATGATGACACATGATGAtcatctgtcactttacttagattGTAGAATGACacattataatatatcataaataaatataagcaattataatatttaatataagtgTATTTAATGAGTGGGACAGGAactaactacagctctggaaaaaattaagagaccccatcagtttctgaatcagtttctctgattttgctatttatagttatatgtttgagcaaaataaacattgtagttttattctataaactacagacaacatttctccaaaattccaaaaagaaatattgtcatttagagcatttatttgcagaaaataagaaatggctgaaataagaaaaacgatgcagagctttcagacctcaaacaatgcgaagaaaacaagttcatattcataaagttttagagttcagaaatcaatatttggtggaataaccctggtttttaatcacagtttttatgcatcttggcatgttctcctccaccagtcttacacactccttttttttgataactttatgccacttctggtgcaaaaacaagcagttcagcttggtttagtttgatggcttgtgatcatccatcttcctcttgattatattccagagtttttttaatttggtaaaatcgaggaaaaacatcatcattaagtggtctcttattttatttttccatagctgtatttataaccatgtttataatgctttataatgtgttatgagcatgtttatagagtctaatagacatgacACTCATTGAAAGTGTTGTTACCACCTGTTCTAACATTTATATAAACTAAAGCACACCCTCCTTCAGTTcacagaaaagtaaaaaaaaaactttagctaAAATTAACTGCTTAGACTCGTCGCCATATTGCTCAgctagtaatgtttaataaggTTTAATAAGGTTTATTATGTACAGAAATTACAATCAGttattcagaaactgctgtGTAAGGAAGTATGGTATGTAATGAATGCAGTTATTATGAGCGTGAGAGAATTTAACGTCTGGACCCGCAGGCAGATCAGATCTGCTGACTATGAggtgttataaaaaaatatttttaaaacatatgaataaatctaatttattaTCAAATGTTGATTATAATGATGTAAAAACTGCCATAGACAGCCTCTTTTAAGGAATTCTGTGCACTCTGTATTGAGAGGTGGTCTCAGGGAGCCACggcctctttcttttttttcttgcaccCCCCCAACACTGGGACAGCTCCGGCCCTTCTCTGTGGATCGGGATGAGCAAGGACAGTTGGAGGGGAAGGAAACCCTGAAGAAATGCAGTCCCATCCATCCGGCAGGTCTGCTCCCCGAGGTCCACTGCTCCACTTACAGCAATCTGCTGGGAGCTCCAGCgagctctctctcgctcttgctctatctctctctctcttcctctctttctctctttttctctcagccCCAGTTCTACTGCTCTGCCTGATTGGAcccagcaagagagagaaagaaagagagacagagaagagagagaagatttAGCGTGGTCTCACCATCACCACGCTGTGATATCAATATCATCCCTCTGTGAAACTGGAACGTGTGTCTTATGTGATTTAAGAATGACCTTGCAAGAACAGAGACTGAGACTGCATCGCCGCCGTCCAGCCAGCCTATGAGGCAGCACTTCTCTTGGCCATTGCTTTCAGCAATACTGTTCATATGAATCATGCGTGGACTCCAATCGCCGACCAAATGCATTTTTGGGAACGAATGCAGCGTTCAACCTCATCTGCACTGTGTGTTCAATCGTTTAACTGTGCCATCATTAGCCTACAGTGGAGttgaaagtttgtgaatctTTTGGAATTTTCTACATTTCTGTGCAAATTTCTCATTAAATTTTCCTAAAAgttctaaaagtagataaagagaactaaatcaaacaaatgagacCAACATAGTATACatgcacttttatttattgagggaAATGATCAAATCCAACATATCTGAGagtggcaaaataaaaaatgtgaaccTTTGCTATCAGTATCTGGGTTGACCCCATTCCCTGTTTTTTTCGGTAACTGAAAAACAGCTTCAACTTACCACATTTTTCCTAAATTTGCATCAGGACATTGAtgtgatcattccagaacattaGCTTTGTTTGCTACTTGTTTGCTAAGGGTCATTGTCTTGGTGCATGTCCCACATTGCCATCAATAATGATATTCTATCCTGGCCCACATGCATCAAAATGCCATGCCATGATGCTATCATCTCCATCGCGTTTCACCGATGGGATAAGTCTTTTATGCCGGAATGCAGAGTTTTACTTTTCCTTTCTCCATACATaactctttttatttaaaccaaaaagCTCTACTTTGGTCTCATCCGCCCACAAAACCGTCCACAAAACAGTGGTCCAATAGCCTTCTGGCTTTTCAAAGTGAGCTTTAGCAAACTGCAGATGGGCAGCAGTGTACTTTTTGAAGATCTATGAAGGCTTTGAATGCAAATCCTGCATTCAAAccatttttattcagttcttcATGATGGTGGACCCATGCACATTAACCATAACCAATGTGagaaaggccttcagttgcCTAGAGGATACTTTGGGCTATTGGACAATAACATGCCTTTAAATTGTCTGCTAATTCTTACTCTTTCCACTCACAGATATGAAATATTGtatagttttttaaattaatgtccAAGTCTAGAAATTTCCCACTATTTATGTGGTTCTCCTCTTCTATTCCGATGAAGTTTTAGCTCGAATGTAGACAGAAATATGAAGCCTAAAAATTTCAGAAAGGTTTCAACAAACTTTCACACACTAGATACCTTCCTCTCAGCATAAAAGCCATGATGGTGCAAGAACGGGTAATTATTAGCTCAGATGAGGAAATCGTCAGATCAATTGAAAGGTCAGTGATTTTTGGGAAGACATGAATGGTGCAACTGGAACTCATGGTCCTGTAAATGTGGATAGAACATTGTATGTGCAAACGTGTCTGAACTGATTCTCACTTTAAGTTCACTAGGCTAGCTATTTATTACACGCCTTATTTATTATGTGTGTTATTGTGAGACATCACTCGAAGGTCTTATTTTGTATCCGAATCTTTTTGGGCGCCGGCCCCCTCATAAAGGGCGCTGGTGGTGTATTGGAATGGTTATGTATGTATATCCTGTTGAAGAACTGACTGTAAATTGTGTATTTTCCAAGATGTACAGGGTTCGAATCATATTGGCACTTTTGAAGTAGAAGTGATTTTAAACCTTGATGATGATCAAATGCTGAGAATTTAATAGGAGATGCTCCTGTACATTTCCTCTTAATAGTGGTTTTCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68702 True 4439 lncRNA 0.35 2 9614528 9622057

Neighbor

gene id symbol gene type direction distance location
ccser1 ccser1 coding upstream 2118 9447164 ~ 9612410 (+)
trim36 trim36 coding upstream 173000 9411531 ~ 9441528 (+)
pggt1b pggt1b coding upstream 209194 9386113 ~ 9405334 (+)
ccdc112 ccdc112 coding upstream 228837 9379126 ~ 9385691 (+)
fem1c fem1c,LOC106580179,LOC107728259 coding upstream 250037 9357767 ~ 9364491 (+)
LOC103021556 LOC108426667 coding downstream 423944 10046001 ~ 10115996 (+)
LOC103023534 LOC108426669,LOC103362312,LOC108265349 coding downstream 509796 10131853 ~ 10167520 (+)
kansl3 kansl3,LOC107678435,LOC107661339 coding downstream 682364 10304421 ~ 10333429 (+)
LOC103024888 bmp1,bmp1a,LOC103024888,LOC108426680,LOC107710833,LOC107678424,LOC107661342,LOC106579847 coding downstream 729044 10351101 ~ 10418581 (+)
LOC103037223 rab7a,zgc:100918,LOC103037223,LOC108426684,LOC105902761,LOC107588983,LOC105015198 coding downstream 993305 10615362 ~ 10627483 (+)
G50841 ap3s1 non-coding upstream 290365 9309260 ~ 9324163 (+)
G50822 NA non-coding upstream 360402 9253173 ~ 9254126 (+)
G50818 NA non-coding upstream 410311 9204016 ~ 9204217 (+)
LOC107197475 NA non-coding upstream 607882 9004992 ~ 9006646 (+)
G50770 NA non-coding upstream 668156 8945273 ~ 8946372 (+)
G50901 NA non-coding downstream 99288 9721345 ~ 9733234 (+)
G50907 NA non-coding downstream 177914 9799971 ~ 9803653 (+)
G50961 NA non-coding downstream 292096 9914153 ~ 9915227 (+)
G51039 NA non-coding downstream 423194 10045251 ~ 10045528 (+)
G51044 NA non-coding downstream 495339 10117396 ~ 10117741 (+)
G50583 LOC108437602,LOC103398889 other upstream 1270014 8342940 ~ 8344514 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other upstream 1335772 8270248 ~ 8278756 (+)
G50568 NA other upstream 1393366 8207342 ~ 8221162 (+)
c6h9orf3 NA other upstream 1730470 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 2630267 6984190 ~ 6984261 (+)
G50889 grid2,LOC107556295 other downstream 21317 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 501663 10123720 ~ 10130801 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other downstream 1065828 10687885 ~ 10757255 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other downstream 2210624 11832681 ~ 11882021 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other downstream 2462023 12084080 ~ 12129300 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G138267 NA non-coding CI01000027 null 933743 ~ 934498 (+)