G51051


Basic Information

Item Value
gene id G51051
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 10184552 ~ 10186281 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU68897
GCAAAACACAAGTAAAAAGCAAAGTAGCCAAAAGATGCCTGCTGTCCTAATCCGGTTGAGACAGTGATTTGTCTAAGATTCCTTTCAATCTGCCAGCATGGAAAACTGCTGATGTAGCATGAAGAACAGGCAGTACATGTCATACAGATGCTGTCTTGGCACATAATAACTTAGGAGTTGAATATGCTGAAAacgctaaaaaaaacacaagaacaaAGGATTATTACACATTATGTCAAACTGTGAAGTGATTTATATACAACAGgtacataaaaaacaaacaaacacgcaCTTCTGGCAattttattagcccttggccagaACACGTTTTTGTTGGCAAGCAAACAGCTACTCATAATCGTCTCTTGCAGATATTCTAGGTCAGTGTTCTCtaggggtgtaacagtacaCGTATTTGTACCAGATCGTAATGGTTTTGTGCACACAGTTGTATTGAGTCGTACGATACGTGAAAAGCTATAGATGAAGTGTCCACATTGTGAATGAGGTCAATGAATGTAACGCAGAACCAAATTTTACAAGTGAGAGTTCCTTTCAGGAGCCTTAATGCTGTAATATGATTGCAAGTAATACTGCATTCCATTTAAACTCAGATGTCAGAATTTCTGAGTTCCAAGTTAAAAACTTTTATAAACACTTCCAACTCTTTGTGTATCATTTTGTGTATTATGTGTACCTATTTTGGTTTGATTAAGTGAagtgttttaaacagtgttCAATTCTTGGAATGTTTAAAGgagaaatggacttggggtgaaACAGGTACAACTTAAACAAATAGGTGGGAcaggggaacagattgcaaaattaatttagtggaaatgcatgaattctagctgttacagaaaatatatctataatatttatgcatttccacagaattaattttgcaatctgctcCCCTATTTTTAGATGTGtgcataaacagtgtttttaataataaactatgtgtgcactttcaaagctctCAGTGCCTCATTTCAAATATTAGGGcgctcagaattctaccaatgaaagatggagctactttgagcttgttaatggtgtaaaaatagcaattaCTTTGCATGGAAAGCTCTATGCCCCCATTGCTTGCATTGTAAGTCTGTTGGGTCCGTTTCataccagatttctcctttaagtggaATGCTGTCAATTTTGATGTAATGTGAGTCCCAGCTCCAGCATTTAACTTCTGAGAAAAATGGAACGTAGTACAAACTATGTATTTGAATCGCACTGTGGGGCTTTTGTTGACTTTCTATTTTCTTTAGTTCCTCATATTTGTTAATCTTTTTAaggacctggcgtccacatgtggACGTTACATTTTGTGTTGTCTAGACCACAAAACAAAATTTTGCTCgacaagggcctggtgtcctcttatcAGGCTATTATACTGTCACCAAGTGGTGACAGAAGAGTTTAACATGTTACAGTTTCGAATTTattcagaaatttaaatgaacagtaaatatagtaaacgtttagtaaatgttttttcctttgTAATTTTTTcgtgttgaagcagcactttAAATAAGAGGGGCACAATTGTtatttctacttttgttttgcactcagGAAAAAAATGCTGCTGCACATCATTACTGATTACGACTTTGTTGTGTTCTATTGAAATAATGTGTGGACATAATTTTTCtaagaaactacatcatgtaaaaaaagattattttttgttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68897 True 1730 lncRNA 0.35 1 10184552 10186281

Neighbor

gene id symbol gene type direction distance location
LOC103023534 LOC108426669,LOC103362312,LOC108265349 coding upstream 17032 10131853 ~ 10167520 (+)
LOC103021556 LOC108426667 coding upstream 68556 10046001 ~ 10115996 (+)
ccser1 ccser1 coding upstream 572142 9447164 ~ 9612410 (+)
trim36 trim36 coding upstream 743024 9411531 ~ 9441528 (+)
pggt1b pggt1b coding upstream 779218 9386113 ~ 9405334 (+)
kansl3 kansl3,LOC107678435,LOC107661339 coding downstream 118140 10304421 ~ 10333429 (+)
LOC103024888 bmp1,bmp1a,LOC103024888,LOC108426680,LOC107710833,LOC107678424,LOC107661342,LOC106579847 coding downstream 164820 10351101 ~ 10418581 (+)
LOC103037223 rab7a,zgc:100918,LOC103037223,LOC108426684,LOC105902761,LOC107588983,LOC105015198 coding downstream 429081 10615362 ~ 10627483 (+)
LOC103038909 LOC108426628 coding downstream 460503 10646784 ~ 10712084 (+)
LOC103034408 NA coding downstream 874867 11061148 ~ 11075830 (+)
G51050 NA non-coding upstream 11555 10172795 ~ 10172997 (+)
G51044 NA non-coding upstream 66811 10117396 ~ 10117741 (+)
G51039 NA non-coding upstream 139024 10045251 ~ 10045528 (+)
G50961 NA non-coding upstream 269325 9914153 ~ 9915227 (+)
G50907 NA non-coding upstream 380899 9799971 ~ 9803653 (+)
G51059 NA non-coding downstream 80375 10266656 ~ 10266862 (+)
G51060 LOC103022194 non-coding downstream 81080 10267361 ~ 10285215 (+)
G51077 NA non-coding downstream 236767 10423048 ~ 10428757 (+)
G51096 NA non-coding downstream 398192 10584473 ~ 10585274 (+)
G51052 NA non-coding downstream 449378 10635659 ~ 10636918 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other upstream 53751 10123720 ~ 10130801 (+)
G50889 grid2,LOC107556295 other upstream 401831 9643374 ~ 9782721 (+)
G50583 LOC108437602,LOC103398889 other upstream 1840038 8342940 ~ 8344514 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other upstream 1905796 8270248 ~ 8278756 (+)
G50568 NA other upstream 1963390 8207342 ~ 8221162 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other downstream 501604 10687885 ~ 10757255 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other downstream 1646400 11832681 ~ 11882021 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other downstream 1897799 12084080 ~ 12129300 (+)
znf692 znf692,LOC108442337,LOC107750903,LOC107695246,LOC106613837 other downstream 2251123 12437404 ~ 12448516 (+)
G51743 dohh,LOC107745802,LOC107695215,LOC107585881,LOC107548993 other downstream 3129458 13315739 ~ 13327325 (+)

Expression


Co-expression Network