LOC103038184 (acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403)


Basic Information

Item Value
gene id LOC103038184
gene name acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 10687885 ~ 10757255 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU68972
AGACTGTTGAACACTTTTATTCTGTGTCGAATAAATGGTCCAAGTTGAACATTTCCAGTGTCTTCTACAATCAGTTTGTTGTTTTCATGATTTCACaagacaaataaatataaaatgaccAAAAACAAATGAGTTTTAAGGTATTTAACAAGATTCCAACAGAGATTACAATCAACACACAAGAGAAGCAGAGAAGGCTGCTGTACCAAAGTAGAgaaacaagtaaaataaaaacaaaataaaaacaaaggacAGATGAGTGAGAGATTATCATCAATGTTTTAGCATAAATAGAGAAATTAAGACATTTAAGTAAATAAGATTTATTCAGCTAAGGTTTTTGTGAAAATGCTCAGTTCTGGAGAGAAAATAGCCTCCAAACAAGGCCGTAACACCCCCaacattttacataaattaaCCTCAGCTGTTAATGCCCCGGTGcttttaaatagtaaataactgATGGTATTAGCTGGAATATAACAGattggagaaaatgaaaaagattcAGGTGAATAATTTGAATCACAGCACCACAGCGACATCTAGTGGACATTTAGTAGTCAAAACATCATCAGTCATCTAATAAACATCTAGCAAACAAGTGTGTCTGAAAGATAACCGAGAAAAATGCTATGTTGTTGATTTAACCATTTTCTGTAGAAACATAAATAATCACTTTTTAATTCACTTTGCACgtctttaatttttatataaaattgtcGCTTTATTTGGTTTGTGTTTAAAATGAGAAACCAGATTCTAATCATCAGCTCTGTATCTATAATAAGCAACTGCTGAGCAAATTTCACACCAATAAACCTGCTCTGAATAAGTCGCTTTACATATCAAAACTAGAACTGAGCAAAACATTTCAATCTGAATGTGAGGATTTCTCCTTTTACAGACTTTATCAAGCCCtgaggcagaaccaatcagtcAACAATCACTGCTAAAGGCACATCAGTTTTACAGACTGTAGACTCAAACATTAAACAGCGCTCCAATAATGTTCAAGAAGCTTTAGAGTAAAAACCCTTACGTTTGGCAAAAACTTGTGGAATCATTTCTTATTACATGTAGAAACAAGAGGAAGAcgatgaggatgaagatgaaggaGCACTTGCTTGTCTAATTGGTCCTAAAGATGAACACTGGGTTATGgctagacctgtcacaataattactttattaaaatacagtacaataaagGCCCTGACCTCAAACATTTCTGATGACCaagaatacatttaattactgtaaattaactaaattaattaaaatatctgtacagctctggaaaaaataagagaccacttcattttctgaatcagtttctctaattttgctatttataggtatatgttgagtaaaattaacattgttgttttattctataaactacacacaacatttctctcaaattccaaataaaaatattgtcatttagagcatttatttgcagaaaattagtaatagctaaaaaaaaaaaagaatgcaaaaaaagatgcagagctttcagacctcaaataatacaaagaaaacaagttcatattcata
>XM_022671127.1
ttctctctctctctctctctctctctctctctctcagctatGCAGTTGCAGGAGTGGTTGCGTTCTCTTCGTCCCAGCAGTGGTGGATTGGGGAAATCATTAGAGGAGGATATTCGGAGTCTTCTTCCCGCTCTCCCCTCCtcgttctcctctctctccctctctccacccTCTATCATCGGACTGGGAGCGCTGGCGTCCCTCACGGCATACTGGCTAGTCACTCGGCCCCGCTCCATACAGCCACCATGTGACCTGCAGGCTCAGTCCGTGCCTGTAAAGGGCGACCCGAGCTGCAGACGTTCGGCTTTATTGAAAGACGACAATCTGCTGGACTTCTACTATGAAGACACAAAGACAGTATACGAGGTGTTCCAAAGGGGCTTGAGAATAGCAGGGGATAGACCATGTCTTGGCTTCAGGAAACCAGGAGAGCCTTACCAGTGGATACCTTACACAGAGGTGGCAGAAAGGGCTCAGGTGCTGGGGTCCGGCTTGCTGGCAAAAGGATGCAAACCTAATCCCAAACAATTTGTGGGCATCTTTGCTCAGAACAGGCCAGagTGGGTTATTGCAGAGCTGGCCTGCTACACTTTCTCCATGGCTGTAGTGCCCCTGTACGACACACTGGGTCTAGAGGCAATGGTACACATCCTCAATCTGGcGGAGATCTCTTTGGTGATCTGTGATAAAGAAGAGAAGGCAGAGTCTCTGCTGCTGAATAAGGAGAAGGGAGTGACCCCTGCTCTGTCCTGCCTGGTGCTCTTTAACCCTGTCAGTGCTGCTCTGGTGGAGCGAGGGAAGGCCTGTGGAGTGGAGATCATGCATCTTTCAGAGATCATGGATCTGGGCCGGGAAAACCTTAAGACTCCAGTGcctCCCAAGCCTCAGGACCTTGCAGTGGTGTGTTTTACAAGTGGGACAACAGGAAAGCCGAAAGGAGCTATGATCACCCATGGCAACATAGCCTCCAATACGTCCTCTGTCATTAAGATCTTAGAGGGCTTTTTCGTGATTCGCCAAGAAGACGTGTCAATCTCGTATCTGCCTCTGGCTCATATGTTCGAACGCATGATTCAGgTGTCTATGTTCTGCCATGGAGCTCGAGTGGGCTTTTATCAGGGCGATATCTCGCTGCTCATGGACGACATCAAGACCCTGAAACCCACCTTCTTCCCTGTGGTGCCCCGCCTACTCAACCGCATCTACGACAAGATCATAAGCTCGGTGACGTCTCCGCTGAAGAGGGCCATCCTGCACTATGCTGTGAGGAGGAAACAGGCTGAGCTGAGCTGCGGGATCGTCAGAAACAACAGCTTTTGGGACAAACTCGTCTTAAACAAGATACAgGCCAATCTAGGGGGGAATGTTCGGTTCATCCTGACTGCCTCCGCTCCCATCTCCCCCACGGTGCTCTCCTTCCTCAGGGCCACACTCGGCTGCCTGatatttGAAGGCTATGGACAGACTGAATGTACGGCTGGCTGCACCTTCTCTATGCCTGGAGACTGGACTGCAGGACATGTCGGAGCTCCTCTCCCATGTGCCAGAGTGAAGCTAACAGACATTCCTGACATGAACTACTACGCCAGCAGCGGAGAGGGAGAGATCTGTATCCAGGGACCCAGTGTATTTCAGGGTTACCTGAATGATAAGGAGAGAACAGATGAGGCTCTGGACAGCGACGGCTGGCTGCATACAGGAGACGTGGGACAGTGGCAGCCAAACGGGACCCTGCAGATCATAGACAGGAAAAAGAACATCTTCAAACTGTCTCAGGGAGAGTACATCGCTCCAGAGAAGATAGAGAACGTGTACTCGCGCTGTGTACCTGTGCTGCAGGTGTTTGTTCATGGAGACAGTCTACAGTCTTTCTTGATAGGTATTGTAGTCCCAGACCCAGAGGTGTTCGTTAACTGGAATAAAGACAGAGGAATTGTGGGATCTTATGAAGAGCTCTGCCAGAATCCTGATGTGAAGAAAGCAGTGCTGGAGGACATGACCGCAGTGGGGAAAAAGGCAGGACTGAAGTCGTTTGAACAGGTGAAGGACGTGTATCTGCACTCAGAGCTGTTCAGCATTAGTAACGGTCTCCTCACCCCCACCCTGAAGAGCAGACGAGTGGATCTGCGCAGAGTCTTCAGTGAACAGATCAATCAGATGTACAGCACAGCCGCCCTGTagactccacacaaacaccctgcGACTGTCCTGCTCCTGTTCGAGCAGAACCACATCAGAGAGGGTCTCTGGACATAGCTATGGGTTTTCTTTTGATGATATGAGGGGAggtataatgtatttttattattggttTATATTATTTTGCTCCGTCCACTGGTGAAcagtcatcaaaaaaaaaaaaatcacaatcatTGTGCAGTAAGTCATTACACTCTGATGGAAGATTAGAAGGAATTAAGAATTGAGTCATTTGACTGCTGTGAGAGATCTGATAATATATAAAAGGATCAAAACGAAAAGATGCATTATAATATCCAGTTTACTATTTGTGGAATTCCACGTTCATGCTAATCTCAGTAgaacttaatttattattattattattaactctgATCAGTCACAATTACGTCCAGCAATAACAAAATCATGCTGTAATTTTAGATTTCCAATTTTCAGCCATTTAAAGccatttaaaacaacaaagaaaccaCGCTTCTGACATTTCATCTAAAGTCATGAACAAGAAATATCGGAGGGATAACATTCGTTAATTATAATTCCATCACTAATCAGATGTAATTTAGaagttaaataattttaaagtcTCAATTCTGGTGGGATTTTTATTCTGTCCACATGTatccagatgtttttaaaaactgtctggatatttgtattttttcttatcttatccaggcctggaaatatcTTTATTAACTCCATGActtttcaggtttttcatgaccgtacgaaccctgtgTAATGTAATCTGATTTAGAACAATTTCATTACTGGGGGGTGTTTTTTTATGGGAGTCATCAGATCATGTAGGAATGGAGGCTCATGCAAGcgtttttaaatatatctggATACAGACAGAGCCTAAAACATTTTAACCTGCATCCGTCCAACTGCAGAGGAACCCACGTTCTGGGAATGCTACGTGTTCTcgtattttttttgctaatggATGATGTTTTAATTTCTGCTCGTAAAAATGCAGTGAATTTGAATCGTCATGGTAACAGCTTCATTCTGATGTATCATTTCTGATGATTAATCAGCGGGATGATTTCTAATGTAAACCTTAGAAATGTAAAGCTGTGTAATttatgcagtgtttattatttgaAAGAACTGTATGGACTGTAAATGTGACACTTTGAGCTGTACATATTCCGAGGTGTAAAACCTGTAGATTATGAACTCTTCGTTTTAGTAAAGTGAAAACGTAGGATTTTCAGAAGAACTTCATGTGTTTTAATGTAGAAATGAAAAAGTTATAGGAAAGACTGTTTTATAGGAAAGACACTTTTATTCTGTGTCGAATAAATGGTCCAAGTTGAACATTT

Function

symbol description
acsl2 Is expressed in brain; gill; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in acute myeloid leukemia and leukemia. Orthologous to human ACSL6 (acyl-CoA synthetase long chain family member 6).

NR:

description
long-chain-fatty-acid--CoA ligase 6

GO: NA

KEGG:

id description
K01897 ACSL, fadD; long-chain acyl-CoA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
TU68972 False 1560 lncRNA 0.32 2 10687885 10757255
XM_022671127.1 True 3536 mRNA 0.45 20 10732902 10755749

Neighbor

gene id symbol gene type direction distance location
LOC103037223 rab7a,zgc:100918,LOC103037223,LOC108426684,LOC105902761,LOC107588983,LOC105015198 coding upstream 60402 10615362 ~ 10627483 (+)
LOC103024888 bmp1,bmp1a,LOC103024888,LOC108426680,LOC107710833,LOC107678424,LOC107661342,LOC106579847 coding upstream 269304 10351101 ~ 10418581 (+)
kansl3 kansl3,LOC107678435,LOC107661339 coding upstream 354456 10304421 ~ 10333429 (+)
LOC103023534 LOC108426669,LOC103362312,LOC108265349 coding upstream 520365 10131853 ~ 10167520 (+)
LOC103021556 LOC108426667 coding upstream 571889 10046001 ~ 10115996 (+)
LOC103034408 NA coding downstream 303893 11061148 ~ 11075830 (+)
stc1 stc1,LOC107665189,LOC107747716,LOC107553168,LOC107559448 coding downstream 446820 11204075 ~ 11221124 (+)
nkx2-6 nkx2-6,LOC107081961,LOC102231304,LOC103470093,LOC105012089,LOC106591187 coding downstream 498463 11255718 ~ 11259462 (+)
nkx3-1 nkx3-1 coding downstream 527632 11284887 ~ 11287215 (+)
LOC103043198 grm6a,LOC108439669,LOC107601768,LOC107674373,LOC107653428,LOC107743101,LOC106566502 coding downstream 832069 11589324 ~ 11698963 (+)
G51052 NA non-coding upstream 50967 10635659 ~ 10636918 (+)
G51096 NA non-coding upstream 102611 10584473 ~ 10585274 (+)
G51077 NA non-coding upstream 259128 10423048 ~ 10428757 (+)
G51060 LOC103022194 non-coding upstream 402670 10267361 ~ 10285215 (+)
G51059 NA non-coding upstream 421023 10266656 ~ 10266862 (+)
G51255 NA non-coding downstream 177199 10934454 ~ 10992773 (+)
G51268 NA non-coding downstream 292560 11049815 ~ 11050016 (+)
G51288 NA non-coding downstream 443066 11200321 ~ 11200667 (+)
G51289 NA non-coding downstream 443531 11200786 ~ 11201094 (+)
G51290 NA non-coding downstream 466425 11223680 ~ 11320289 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other upstream 557084 10123720 ~ 10130801 (+)
G50889 grid2,LOC107556295 other upstream 905164 9643374 ~ 9782721 (+)
G50583 LOC108437602,LOC103398889 other upstream 2343371 8342940 ~ 8344514 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other upstream 2409129 8270248 ~ 8278756 (+)
G50568 NA other upstream 2466723 8207342 ~ 8221162 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other downstream 1075426 11832681 ~ 11882021 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other downstream 1326825 12084080 ~ 12129300 (+)
znf692 znf692,LOC108442337,LOC107750903,LOC107695246,LOC106613837 other downstream 1680149 12437404 ~ 12448516 (+)
G51743 dohh,LOC107745802,LOC107695215,LOC107585881,LOC107548993 other downstream 2558484 13315739 ~ 13327325 (+)
G51745 NA other downstream 2599470 13356725 ~ 13368274 (+)

Expression


Co-expression Network