G51172


Basic Information

Item Value
gene id G51172
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 10553018 ~ 10561082 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU69054
atttgcttaaatcaaagaaactcaaataaactaatcatttttaagtggtctctttttttttttttagagctgtatggtatgtataaatatatattatattctacaGATGTGGCACCTCAAGATTAGGTTGGAAAACGCTGCAGTATTCCTATAGAGATTCCTATTTAAGACTCCAGCTACTGTGCTGCATATTTCTAGTCATGAAAATTTCCTCAAATGTCCAGTTTTTGGGGAGCTCAACATGACCTCGACTGAACAAAGCTATTTATTTGATTGGCAGTAATGATAACGATCATGTCTTTTGAAATGGACTGCAGCAGCCTTTCCTGCAATGCCAAACACAGACCAATCATCCTCTCGCCCTTAACTGGAACCGACCACGTAGATGTAATTGTgtcccaaaatgtctgtgccaATTCCATTCTCCTAGTCAAAGTGTCCTGAATATTACTGAAGCGCTCGTCTGCCTGCTCTGCTCTTTTACAGAAGAAACGGAGAGGTACTGGAACATGTGTTTAATAAATGGAGTCCCTATTCAAATCCACAGGGGGAGTTAGTTAGTCCTGTTTGCTGCCTGGGGAGTCTTTATATAGACGTTTAATAATGAAGAATAGAGCCCGATGAACAGTAACGAAATCATTGCAGCAGAGCATTGTTCTTTATAAAGTGTCAGTAAATTAAGACTGTAAATATAGTACAGTATGTAAAGTATGTGGTGTCTGTAAGTTATTGgtggatataaatatataggcTGATTTTCAGGGCACCGCTGTCGGTTAGGTGCAGTTGTCTTTCTGTTCGCTGgttacttgtttatttatggAAAACGGGTTACAATAATGGTTGTGACACAGTTTTTTTGGGCTGTGTGACTGTGTGAATATGGTGCTGTAACTCGTGAGAGGGAACACCAACCATTTTTGCTTCTTTCTTTTTGAGGCTTCATCTACCAAATCAAATCTGTACTCTGTGCTTAGTTAGCATGGACATGTATTTTGGTGCATTACCGTACACTTGGTTCCGGTAAGACAGAGCAggattagctagtggttcatcttatgtagctttttttaacactgtaaacacgcaggctacagtctgatatactcctctttgaacggcaaaagagctagctcttagcgcggctagcgactaatgctaatactgctcaagCAGTGCttgccggggttagcagcaggctacaatccTAAGAGTGACACTAAtgcttagtggctaatgctaatactgacaGCCTAtatggtaaaattcatacaaaaggtacactgatgatttttgggaaaatttgaggattttaagtgcgccttatagagACTTCAAAGAGTTTTATCCCGTGTTTGACcaccataaacaaaaaaaaagttgttctaaTTGTTTTTCCCTATTAATGCTGGTCTTTATCTAATCTCAGTTTTGACCACTGGGGTCattaatttagtatttagtagCAAAAAGCTCCATTAAGCAGCAAAAGCAGAACATTCAGATAACagaatattttgtctttttcttgtaAGTTGTATCAGTTTCTGCCTTAGAAGGAAAAACGAGTCGTTCCCGATTCTTTTGCTTTCTTTCAGGATGCATTTTGCAGTATTTAGCaccaaaaaaagagaagagaactaAAACTTCACTGAATCTCTTTTATTTATGCTGTACCTCAGTGGAGTAGGGTTCGTTTTGCTGCTTtatataacctgactggtagggaaaatttaaggattttaagtgcaccttatagcaCAAAAAATAcgaaaattgtaataaatgactaaaaatggcaactttacagtagAAGAAAATCAAGTCATGTTGGCATATTACTGTTGGTCCAAACTAAAGATTTACTGATGAAATTTAGCCACTGTCCATTGGCTTCTAttataagtgatttttttttattttttttttattccaaagcGAACAGAGAAACAATCAgacagtactgtatatgtgcATATGTGGTAATTTCCCCTTACGCTACAGATGTTCCAGATAGAGATCACCTAGAACGATAAATCAAATAAAGAGACCAGAAACTCTGGGTACTACTAATGGTACAGCCTAAGTTATATCCATTATCCATTTATCCATTCTGCTCAAATCAGTGATCAAATGATCTGAGCCCCTTTCTTTGAATCATTAAAGCGTTAGCTTGTTTTGAATTAGCCGATATGAGCTGAAAATAGGCGATCAAAGAAATGAGATTACAGCTGTGGGCTGCAGTGTGCAAAGAACAAAAGGCCTTTCATCATTACCTCCAAAATGAAACGATTGGAATCAGTCTGCTTGTGTCAGGGTCCTGGCTGTTCTGTAATATTTATGGATGTCTGACTATTTATAGTCTGAATGAGAAGgggtgtgcgtgcgtgtgcgtgtgtttgagtACATGTTGGGGATTGAGCGTTGGTGCTGGAGCTGTTTTAAAGCAGGTGTAGGCTGCTGAGTAGGAATGCGTTTGTCTTGGCTATTCAGTCTCAGATACGAAGATGGTATGTATTATTAATAGCAGCAGTGAAGTGGAGAAGCGTACATTGCCTGCCAGACTTTTGGGGGCAGCGAGTGCTCAGCccatgtgtttttaatacaggTGAGCTTGTCTGTTTAGTCTTTACTATGTTGGACTGTACCACCTTGGGATGAATGACCAACCCCTTATGTTTTATTCACCTTGTTTTGGGGAAAAGAACAGAGTTTTAAAGTGTTCTTCTCCATACCAAGGCAGAGGCCTTGATAAACTAGAAGATAGAAGAAGGAACAGTCCAGAACAACATTTTTGGGTACCATGTTTGTAGTAGAGatgtttaaaagtttgaagAACCTGtgaattgataaaaaaaaaaaaagacccaaaaactttctattaaagtgattgcaccaagcatgctataaaaaatacttttacaatGTGCATTGAGATGCAGACTCTATGAATCTTACTAATTTTAATGTGCCAGCTCTTTTCAGTTCCAATTCTGACCAATTTCTTTGGTTTAACATTACATAAATGAGCACACAAAGACTGAGTTTTCATATCTGATGACTCCATGTTCACAGTAGCTTTTGTATCAGTGCCATTAGCAGCTCTACAGTTGGTCAGGTAAACAGGAAAAGCTGTTGCAAACAGAAAAAGGTCCCGGAACCTTCGAGGCGccctgtttttagaatgaatgaatatgtCTTTGCAAGAATAGTAGCAGAAGCACATTATTTCCATTTATTATAAAGGTTTGCTCTCTCTCCATTCAGGCACACTACTGCTTTCCATTtaaaggactgctgctttaagtgtAAGCTTTTTAGGcttttaaaaggttcttcaaaGTCTCTTTCACAAACATGGTTCTAAAATGAagctcctttatttttttttagagtgtgttaATACCTAGATTAATGATCAATAGCCACACTGTGATTGGTCAGTGTACCTGTTTTCCTTAATGGTGGTCTTTAGTAATCAGGACACCCCATGGAAAGCTGATTTGTGATTTTGGAACATAACTTGGTTATGTATTAAATTTGCTAGGATGACCCGATTTGGTGGTGATGGCAGTTGTTTCAAATGGTCTCCACTTATAAACTACACTGATACAGAACTAGTAGTAAAGTGTCTTATGTCTTTTGCCCTGTCTCATGGAGGCTAAACAAAACGACAATGACCTACAGCTCCTTCTGCTTTGAATGTGCCATTcccatggacagttctagccagatgccgccagtcacaatcattaccatctATTGTGCTGTCAGGTGTGGTAGGTTATGCCCTTTTATGACATATTCCCAATACACATATGACCTTGTAGATCAATGTTAAATGTCTGCACAAatgggggctctgagtggtccagcgcggtaagctaagcgctgccactatgatcaagagatcgcaggttcgaatcctgttcatgtagcttgccatcagctaccgaagccctgagagagcagaattggccatgctctcttgctgggtgggtagatggcacgcTCTCCCGCCATCACTTCTGAGGACGATGTTaatcagcacagggcatctgagagctgatgtatcggaaccgagttactctgctttcctccgagcgcactgtgaatgtgctagttttcaccctcctggtgttgggacatcactagtaatagggagTCTTAATGAGTTGGTTGagtaaattggaaaaaaaaatgggggggaaaaaaaaaaaatatgtctgtACAAAtttggaaatggaatgtccaATCCGTCTGACACCCACTATGAGACCTTACTCAAACTCTAATCATTCAGGTTgacttgccatgagcatgatggccagtgtttaaccacactcacaagataacccCTCACAACTTATTTTCGATGTTCCCAAATGTtcctaaaataatgcaacacCTCCGGATCAATTTCTATATATTACTATCTCATGATTTTTGTCCAACATTTTTGATAAATCTCAAATgtccatatttttaaataatttaagataACGGCTTAATGGGGTGTCCTAAAGTCTCTACATAACTGTATGTGAGATGCATTGGACAGTGGATTATCTGTACTGTTCTGATGATCGTTCTGGTGGACGGTTTAATGCTGGGTTGAGGTGAGCTTTGCCTTCTGGTGGGTTAAGCAACCAGAATGAGGGGGAACTGTGGCCTGCAGTGTGTTAGGCTTCCATATCCTGATCAGAAGTCGGAGTAAGCGTATTAAAAgagaaatgtaacatttttattcCTAAGATTGTGTCTCTGCACTCGCAGATCGTACAGAGAGGATGGATATGTACTGGGGAGAGAGAGACTAGTTCTGGTGAAGGTCAGCATACAATAAGCTACTGATCTGTCAAAGCTCTCAGAAATGAAcagataagagagaaagaggagagaaggcGTGTGAGAGAGAACAAGGTTgaggtgtctgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgcaagctTTAAGAAAGAGCCTGGTCTGTCAGGTTTCTGTGCGGATTGAATAGAATAGAGTTAAACTGAATACAATACGTGTATTTTTCCCAATTAAGCAGTTGAGTTGAGTGACaaaacccccacacacacacacacacacacacatatacgtaAGGACGACAAGGACATCCATCTTGTCCATCCTCTCATATATATGATGAGTGTGTATCTGCGCTGTGGATTTTTCTCCCGTCCTTTGATTTAACCATTCTTCCTTGAATATTGGATGACCTCTGGATTCTGTGGATGAGTCCCACTACTGTGTCCAAACTCTCTGAATTTAAGATACAGTTGAAataaggagagaaaaaaacagactgtAGATTAACTGAATActccatgtttgttttttcgAAGCATAAGCTTCATCAATGACTAAACATCTGATAACAGGGTTCTTTTCAATTCTGATCTGAGCTCTAGAATATTCTGAGCTCTAGAATATGTGGACATATAGAGCTTATCTATAGTTCATTAGGCAGCTAAACATGCTTGGGGGAGAGCACTAATCACCAGTTGTGTTACACAAGCTAACAGACGCCAGCTCCGCCTGGAATCTCCTAGCAAGTGTTTGAGGGAGACTGAGGGTAAAAAGGTGGCTAGAGCATCACCAGGGATCAAACTAATGCAAATAACTTTTAGCAAAAAGCTCATAAAGGTTGTGTAACACTGAGAACAAGCTTTTTAAGCTTTTACAAGCTTACATGTATATTCCTGTGATGCAGGTGAAGCAATAAAATTCCAAAAATTGTTATGGTCATATTTCAGTCATGACTATTAGAAGTGCTTCTTTAACATAGACAGATCTTGGCGTGGGGTGTTACTCTGCTgccatgtgtgtgtgatgcaatGAACAAAACATCTGTAAGGCCTCTACTGTTTCTCAGCAATGAAACAGATTTGTGAATAGATATTGTCCATTATAAATAATCCGTGTGCATTGTCAGTAGtaatgacagacagacagggagagagacacatgtgaagtcagtcaccgcctcttttcaaactgctgctgattgcacagcacgctcggaggaaagcgcagcgactcggttctgatacatcagctcacagacgccttgtgctgattgacatcttttttggacactttttggagtgatgtgaggagagagcgtcatctacccacccggagagaacaaggccaactgtcaattgtgctctctcagggctctgacagctgatggcaagcagcatgaccgggattcaaaccagagaTCTCCTGATCATTGTGGTAGTGCCTATGCTGCAGGACCACTCGGCGTCACTTTTTTATACTTCTGCTTTCGCATATCTAGAAGCAAAATTGGGAAGGTGTGGAACACAGTGCTCCACGGGACCAATCatagctgctgctgcctgagttGTGTAACGCATAGTTACATTTCAGTGGAGGTGCGCATCCAGTGCACGGTACGTGTAGGCCATGGCATCGGGTACACGTCTACACACAAGGTACGCATAAGCTAATGGCATGGGTTCGACACAAAATTAGCATTTAGGCTGTTGCACAACATGAACCTGAAAAcagatatttattattattataacccTTTATAACCCTTGTATTTTCCCAAATAGCTGTTGACCTATTATAAAAGGCTTTAACCTGCCACCCACCCCCTATAAGAAGTGAACCCTGCTTTGCttgaaatcctttttttttaaataaggcaTCATCTGAAGACCACGGTGAGCATACCGTTTACATACTACTCGTTTCTCTTACACTTCCATTACTTTTTAACCTTGTTAGCCTTGAAGCTCTGCAGTGAAATGAATGAAACGACTTTAAACTCTTATAAATAAAGGCATTAAAGGGGTTCTTTCTGTGAAACCATAGATTACCCACATTTGGttcaataaaaaagtgtttttcaggAAATGTGCAGTATGTGTGaagaacattttataaaatgaatatacCAATTTAATGATTCTTCACTCTTATacttcaaatacaaaaatagttttcaatagaataaaaaatggtTATTCTGTAGCATCATTTAGAGAACCCTTCAAAAGCaccaaacatggctataattaaatacttttaaatactaCTTTGTTGTAAGAGGAAAACTgcgtaaattttttttttttttttgccaggttATCTCCTTGATATAATTCATTTTCATCCCCTTTTTATGACCTGCCATATTGAAacatgtttgcatgtgtgtgtgtgtgttcattgtaGAAGAAGCGAATGTGTGCGTGTTCTTCTGATTTTATGTAATATAACATCTCCACAAAATGCCTGTGAGTTCTTGCCTGCCaatttagttctttttttttcagttcttgTGATACATACTGATGTACTTGTGTCTGTTCGTTTGGAAGAACATCATTAAAAATTGAACGCAAGCCTTTCCTCTCCTCCTTCACATTCGACAGCAGAGGAACAAATGATTCATATTTGTTGGCCTTTGCTCTGCAGTTTTCTGCAGCGGAATGGAGAATGGAGAATGGAGAGAGGAGCGAGCGCCGTCAGCCTGAAGGAGATTTGTTTGTGTAGCTGAGTGCCACTTGCCAACaaaagaagaggagaaagaaaaggcGCTTGTGTGCAGAAAGCAGACTATCAGATTGCCAGTACAGCCGCATCTCCCGCCTTCAGCGGAGCACGGCCAAGACGAGACACCCACACCAAGTGAGTGGGGATAAAGCTTTGACGCTAATTACGAAAAGAAATGgcggtaaacatggtaaacatcgCACTCTAAAAGGTGTACTGAGACCAATGGAACAATAACACAAGAAGAAATTTACATTCAGCGTGTGCTTGAATCTTTAGATTCATGCCTATTGGATTTGTTTGTCTGTAAGAACACTGATGATACTGATGATAGAAATAAAAGCAATTCAGTACCATCaataacactgatttttttcatcACCTGTGGTCATGAGAtcttaaaaaacaatgtatatGATATTAGCTGTGTTTATGTAGAGgtgtaaaaggaaaaaagaaaacctgaaagTTTTAAAGAATC

Function

GO: NA

KEGG:

id description
ko04514 Cell adhesion molecules

RNA

RNA id representative length rna type GC content exon number start site end site
TU69054 True 8065 lncRNA 0.40 1 10553018 10561082

Neighbor

gene id symbol gene type direction distance location
disp3 disp3,LOC107553125,LOC107678473,LOC107562651,LOC107553158 coding downstream 28552 10422909 ~ 10524466 (-)
msmb LOC103022702 coding downstream 275758 10274927 ~ 10277260 (-)
LOC103023015 antxrl,antxr1,antxr1a,LOC108265351,LOC107661337,LOC107710819 coding downstream 287867 10188355 ~ 10265151 (-)
LOC111192763 LOC108426611,LOC108426659,LOC108426660,LOC108426661 coding downstream 508586 10026996 ~ 10044432 (-)
LOC103047313 LOC108426626,LOC108265302,LOC107678475,LOC107747796,LOC107721105,LOC107556234,LOC107698112 coding downstream 536588 9993498 ~ 10016430 (-)
LOC103036512 si:dkey-32e23.4,LOC103036512,LOC107710834,LOC108426682,LOC107562650,LOC107665195,LOC107678420,LOC108265374 coding upstream 1099 10562181 ~ 10611053 (-)
LOC103037541 ubl4a,LOC107665196,LOC107553161,LOC107562643 coding upstream 68324 10629406 ~ 10634629 (-)
LOC103037870 NA coding upstream 74578 10635660 ~ 10637871 (-)
bin3 bin3,LOC107678406,LOC107710841,LOC107553165,LOC107665194 coding upstream 196900 10757982 ~ 10834600 (-)
egr3 egr3,LOC107678405,LOC107716610,LOC107562644,LOC107710840,LOC107665203 coding upstream 286367 10847449 ~ 10855567 (-)
G51210 NA non-coding downstream 85559 10467166 ~ 10467459 (-)
G51206 NA non-coding downstream 134476 10413550 ~ 10418542 (-)
G51186 NA non-coding downstream 228134 10319602 ~ 10324884 (-)
G51179 NA non-coding downstream 264697 10288111 ~ 10288321 (-)
G51146 NA non-coding downstream 366194 10184571 ~ 10186824 (-)
G51229 NA non-coding upstream 111269 10672351 ~ 10757042 (-)
G51251 NA non-coding upstream 310183 10871265 ~ 10871473 (-)
G51267 NA non-coding upstream 440048 11001130 ~ 11002008 (-)
G51349 stc1,LOC107678391,LOC107747716,LOC107665189 non-coding upstream 658699 11219781 ~ 11220205 (-)
G51350 stc1,LOC107747716,LOC107665189,LOC107559448,LOC107710824,LOC107553168,LOC107678391 non-coding upstream 659386 11220468 ~ 11223312 (-)
G51187 kansl3,LOC107678435 other downstream 236551 10313482 ~ 10316467 (-)
LOC103023850 NA other downstream 255570 10294056 ~ 10297448 (-)
LOC103022194 LOC103022194 other downstream 266075 10282487 ~ 10286943 (-)
G50495 NA other downstream 2925297 7613381 ~ 7627721 (-)
LOC103033957 cacna1fb,LOC108437577,LOC107668072,LOC107731232,LOC108265065,LOC107695300,LOC107745766 other downstream 3319294 7168118 ~ 7233724 (-)
G51346 NA other upstream 642972 11204054 ~ 11204423 (-)
LOC103042573 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167 other upstream 1270720 11831802 ~ 11881941 (-)
smim24 NA other upstream 2724221 13285303 ~ 13323683 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other upstream 3004916 13565998 ~ 13592947 (-)
G51960 glis1 other upstream 3102319 13663401 ~ 13664114 (-)

Expression


Co-expression Network