G51251


Basic Information

Item Value
gene id G51251
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 10871265 ~ 10871473 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU69153
GTTGGTACGGCAGTATACAAAAATTGGATACAGCCCAGTCCTACCTCTGGGTACTCCAGTTTACTCTTTTGAAATAACACATGGTAAGTGAATTGGCTATGCAAACTTTAACTGCCCTCTTGGTGTGTAAAGTACCCTATGATGAGCTGGTGACCTGTCCAAGTGGTTTTACTACATTGTCTCCATTGATTCTGGGTGGGATCTGACAC

Function

NR:

description
keratin, type I cytoskeletal 18

GO:

id name namespace
GO:0072359 circulatory system development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU69153 True 209 lncRNA 0.44 1 10871265 10871473

Neighbor

gene id symbol gene type direction distance location
egr3 egr3,LOC107678405,LOC107716610,LOC107562644,LOC107710840,LOC107665203 coding downstream 15698 10847449 ~ 10855567 (-)
bin3 bin3,LOC107678406,LOC107710841,LOC107553165,LOC107665194 coding downstream 36665 10757982 ~ 10834600 (-)
LOC103037870 NA coding downstream 233394 10635660 ~ 10637871 (-)
LOC103037541 ubl4a,LOC107665196,LOC107553161,LOC107562643 coding downstream 236636 10629406 ~ 10634629 (-)
LOC103036512 si:dkey-32e23.4,LOC103036512,LOC107710834,LOC108426682,LOC107562650,LOC107665195,LOC107678420,LOC108265374 coding downstream 260212 10562181 ~ 10611053 (-)
pebp4 pebp4 coding upstream 1694 10873167 ~ 10998451 (-)
rhobtb2 rhobtb2,LOC107553166,LOC107678456 coding upstream 137978 11009451 ~ 11040936 (-)
slc25a37 slc25a37,LOC107559458,LOC107710846,LOC107747712 coding upstream 438051 11309524 ~ 11334108 (-)
entpd4 entpd4,LOC107710847,LOC107747713,LOC107698120 coding upstream 477789 11349262 ~ 11361219 (-)
chmp7 chmp7,LOC107710849,LOC107698119,LOC107678414,LOC107559457 coding upstream 491250 11362723 ~ 11368488 (-)
G51229 NA non-coding downstream 114223 10672351 ~ 10757042 (-)
G51172 NA non-coding downstream 310183 10553018 ~ 10561082 (-)
G51210 NA non-coding downstream 403806 10467166 ~ 10467459 (-)
G51206 NA non-coding downstream 452723 10413550 ~ 10418542 (-)
G51186 NA non-coding downstream 546381 10319602 ~ 10324884 (-)
G51267 NA non-coding upstream 129657 11001130 ~ 11002008 (-)
G51349 stc1,LOC107678391,LOC107747716,LOC107665189 non-coding upstream 348308 11219781 ~ 11220205 (-)
G51350 stc1,LOC107747716,LOC107665189,LOC107559448,LOC107710824,LOC107553168,LOC107678391 non-coding upstream 348995 11220468 ~ 11223312 (-)
LOC111192721 NA non-coding upstream 396377 11267850 ~ 11277532 (-)
G51360 NA non-coding upstream 474689 11346162 ~ 11361450 (-)
G51187 kansl3,LOC107678435 other downstream 554798 10313482 ~ 10316467 (-)
LOC103023850 NA other downstream 573817 10294056 ~ 10297448 (-)
LOC103022194 LOC103022194 other downstream 584322 10282487 ~ 10286943 (-)
G50495 NA other downstream 3243544 7613381 ~ 7627721 (-)
LOC103033957 cacna1fb,LOC108437577,LOC107668072,LOC107731232,LOC108265065,LOC107695300,LOC107745766 other downstream 3637541 7168118 ~ 7233724 (-)
G51346 NA other upstream 332581 11204054 ~ 11204423 (-)
LOC103042573 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167 other upstream 960329 11831802 ~ 11881941 (-)
smim24 NA other upstream 2413830 13285303 ~ 13323683 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other upstream 2694525 13565998 ~ 13592947 (-)
G51960 glis1 other upstream 2791928 13663401 ~ 13664114 (-)

Expression


Co-expression Network