G51338


Basic Information

Item Value
gene id G51338
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 11440564 ~ 11442912 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU69272
GAATGATTTTCGGGTTTGAAATCTAGAAACAGAAAAATTTTAATGTGGTACGATGATGAATCCtaaaatcgtaaaaaaaaaaaataatagttctcagtggtaggggtgggcgatatgactaaaataatatcatggaATTTtagcgatactcttggcgatatgacaaaacactaaaatatttaaagaatacactattgcaacaaaatgaaaatgtatttttattttcgcATACGATATGCTATagcacacctctaactgagatattttaaaaaaaatacaagaattgtttcagatttgtaacagaagtcaatgatccaggaTTTCatgttactaataataatgcactccaaatatctacatatatccagaaagtaaaataaatgatactggacaaatataatgtctctagcagatatataacagaaaatgagaacagtgtgaatttgtcttttgctaaaaaacgcaaaaaagtagaaccctgatgtaataattaggggtgggtgatatggaacgatatttcaaggtataatattgttcgcgatactcaaaaatgttggtgacaTAATCAAGTATGAtactatatggcacacccctactcagTAGTGTGTTAATaagtgttaatatatatatattttttattacatgtgTGTGCATAATTATTTAACTCATGTTTTGAGAAAAGGTTAAATAAATTCGTCGTCATCATTGTATgcatttaaaccttttttttttttttttttgttttaactgccCAGCTATTGACAAGATATCCACCCTGAACTACTGctaatattttaacaattttcTGATCAAGTCTTTAAGAAAATCTAAACATTACTGCAGCAAATAGAGCAGAGGTTAAGCTGAAACATACTGAGGAATccctgtaaatgtaaataccaGGAACAACTCTGCTTCATTTGTAGTGTTTAGTCTCAGTAATTATGCATTTCATCAgaaatctaaataaacaaatctaaACCTCGCTCTCAGTTTCAACAATGGGAAGGCAGTGGTTTGACTTGGCTTATTGGTTCCATTTTAACAGAAacgggaagaaaaaaaaaaaaccactcgTTCCATGCTATCAAGGAGGAGTGGTCGAACCACACAGAGGAAGTGGCTTCCACACAAGACGGGGACCCTTCAGCCACAGCGCGACCATTATGGGGCCATGATGAAACTCTAGCATTGGGTCAGAGTGAAGAAGGAAATAGCTACTGCAAATGGACTAACAAGGGTTAACCACAAGTGGATCCAAACTTAGCTCATGGGCAAAAGGTACTCAATTCCATATCAACCGCCTCATTAAAGACCCAAACTGTAATCAGAGGCTTCTAGATCCACTTTATGGACATTTAAGGACCAGCCCTGAGTTTACTAACAGTATACAGTAAATGTACCTATTGTGTATTTCTGTGGTTTCTGGCGTACAACACTGTTATTGTTGGAAAGCCCCAGTTGCAGCAATTTGGGATTGGACCTTTAACTGCTGATGGTTGTGATTGGTTGGACCATAGAGGTGCGTAGTGGCTGAATGTGGCTGACCTTTTGTGTGAATTGCTGGTCAAAAGATTGATAGAAAAGGAAAGAATGAGAAGGAAAGTAGTAAGAAGTTAAACCGAAAAAGAGCACCACAAGAACCGTAGATACCTTCATAGACAGTCAACCATGCAGAGTGATGGGAATTGCCAATAGAGTTGCCAGCCAAGCAGGTGTACACCCCCGAGTCCTCTATAGTCACATTCCTGAGCTGCAGCACCTCCATATCCTTATCCGTGGTGTTGAGGCCTGCCGTCTAAGAGAGAAGAACCATAGGATGAAGTAGGAGAACACCAGAAGTAAAcccagaacagagagagagagtgagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69272 True 1873 lncRNA 0.37 2 11440564 11442912

Neighbor

gene id symbol gene type direction distance location
nkx3-1 nkx3-1 coding upstream 153349 11284887 ~ 11287215 (+)
nkx2-6 nkx2-6,LOC107081961,LOC102231304,LOC103470093,LOC105012089,LOC106591187 coding upstream 181102 11255718 ~ 11259462 (+)
stc1 stc1,LOC107665189,LOC107747716,LOC107553168,LOC107559448 coding upstream 219440 11204075 ~ 11221124 (+)
LOC103034408 NA coding upstream 364734 11061148 ~ 11075830 (+)
LOC103038909 LOC108426628 coding upstream 728480 10646784 ~ 10712084 (+)
LOC103043198 grm6a,LOC108439669,LOC107601768,LOC107674373,LOC107653428,LOC107743101,LOC106566502 coding downstream 146412 11589324 ~ 11698963 (+)
npl npl coding downstream 468256 11911168 ~ 11921164 (+)
LOC103023153 sec22b,sec22bb,LOC108439390,LOC107548814,LOC107750823,LOC101168279,LOC100705437,LOC107676649 coding downstream 486386 11929298 ~ 11935136 (+)
LOC103041950 LOC108439388 coding downstream 522678 11965590 ~ 12065127 (+)
LOC103041649 slc35a3,LOC108439387,LOC107717552,LOC107585865 coding downstream 630719 12073631 ~ 12092223 (+)
G51312 NA non-coding upstream 13134 11337609 ~ 11427430 (+)
G51313 entpd4,LOC107710847,LOC107747713 non-coding upstream 90336 11346193 ~ 11350228 (+)
G51290 NA non-coding upstream 120275 11223680 ~ 11320289 (+)
G51307 slc25a37,LOC107678377,LOC107559458,LOC107710846,LOC107665186,LOC107553129 non-coding upstream 125043 11308359 ~ 11315521 (+)
G51289 NA non-coding upstream 239470 11200786 ~ 11201094 (+)
G51376 NA non-coding downstream 48583 11491495 ~ 11492137 (+)
G51389 abt1,LOC107584932,LOC107601758,LOC107743137,LOC107653431 non-coding downstream 106071 11548983 ~ 11796013 (+)
G51390 NA non-coding downstream 115029 11557941 ~ 11559333 (+)
G51395 NA non-coding downstream 211729 11654641 ~ 11654901 (+)
G51400 NA non-coding downstream 258440 11701352 ~ 11703334 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other upstream 683309 10687885 ~ 10757255 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other upstream 1309763 10123720 ~ 10130801 (+)
G50889 grid2,LOC107556295 other upstream 1657843 9643374 ~ 9782721 (+)
G50583 LOC108437602,LOC103398889 other upstream 3096050 8342940 ~ 8344514 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other upstream 3161808 8270248 ~ 8278756 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other downstream 389769 11832681 ~ 11882021 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other downstream 641168 12084080 ~ 12129300 (+)
znf692 znf692,LOC108442337,LOC107750903,LOC107695246,LOC106613837 other downstream 994492 12437404 ~ 12448516 (+)
G51743 dohh,LOC107745802,LOC107695215,LOC107585881,LOC107548993 other downstream 1872827 13315739 ~ 13327325 (+)
G51745 NA other downstream 1913813 13356725 ~ 13368274 (+)

Expression


Co-expression Network