G51428


Basic Information

Item Value
gene id G51428
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 11884009 ~ 11886479 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU69392
GTCCACCACAGAGGACATTTAGAGCCTAATGTCTCCAAacactttctcactttctgcacTCACCTCACACTTGTGGTCaggtggtgtgtggagtgttgcGGCAGTTTGACATGATAAGATAAGAAAAGAGGCAAAACCAAGCGATACTCTGATACTGAGGCACACAATTAAAGAGAGATTGATTCTCACATTATTCCAGAAATGACAGACAGACACTCATACATACAAaccaacatacatacatatatacagtcaaCTGATTCTGCAAAGTTCTAATGACCCATTTTTTCACGTACGTAAGCAATCAATCCTGctgttaaagaaattaaaaaacaatggcCTCTTTTCTACTGCATCCATCATATTGACATAATCGACAGTTGCTTTGATTTCAAACAGTTAGCAAGTTTAGTTAGCATGCTAACCGCTAATAGcttagctgatgctcttatccagagcgactcaCAACAACAAGGTAATTCCTATTACAGACTATGACTGagtcaatgtagtgttaggagtcttgcccagggACTCGTATTAGCGTAGCACAGCATTCactcacccagacctggaattgaaccagGCGGtgatgttatccactgcaccacacactAAACGGCCTCGttccacatcactactacagcattagcatgctgtctactatatacaaacatactacaaacaaattacaaggctttttaattgattggttctgattttttagctcagatcagatttggtcATCTTGCCTGTTCATGAATTTATTAATGTAAGCAAACTGAATACATCAGTTTCTTAAACACCATGCAGGCGCACACTCTGATACAGTACATGAACGCATGGTGCCAGTTCACATGTCCAGCAAAAAAGATGCCTTGCTTAAAATCTCATCTGACTGTTCACATGCCCACAAATTAGATATACGCCCAATTTAGGACCAAATATGAAAAAGTGTCTCGAATCTTTTCAAATTTGAGAAGTTTGGATTTGATATGTCCAcacagatattaaaaaaatcagtttaaggcaaaaaaacaaacaaaaaacctaATCTCACATCGCTACCTGTCTGTGTCTGAATGCCTGGGCTGCATTTTGTGGCCACTACATAATGATGGTGCAAAAAGGAGAAGCAATCCTTCCTGGCCTGATTGGAATAGGTTACACCCCCATAATTTTTGTTAATGTATAATgcaatacagaaataaaacgcATGATGAAAATTgggcaaaatgacaaaaaaaaaaaaaaaaaaaagtttagataAAAATGCTAGTTTTTATAATCATAATTCTGTTTCGGTCAGGGTCAACTGTACCAAAGACCTGCCCAAACTCTATTGCAGcccaggctttttttttttttttttaatcaacccTTTTAGATTTTAGGAGGTTCCCTGCTTTAGGATACTGGCTAGCCAATCAGCAGACCTCTATATCACTAAGCCCGCCCAGTTTTGTGGTTAGACAGTTCAAGTGTGGTAAGACAACCAAGCTAAGAAAACCAAGCTCAGCCCGGTTCGTAAGTTTTCCGTAACCAAACTGTTCCCGAGtaaaaaagccattttttaCTGGTCAGCTCTGCAGTGGAAAAGAGGCCAATGATCCTGTAAACTCTGCcgagaaattaaattaataggCCTATTAGTCCTATTGCGTAAGAATGCTGATCACATGACCACAGATCAAACGATTCAGCCGGAGAATCACTTATAAACCCACAATCATACCTTAAACCCATTTTTAATGATCTCAGATTTGATTGAAATGAAGAAGGAAGACGTATAAAGATATGACGAAAGAAAGGATGAGCAAGTTTGGCCCCCATCTTCAGTTTGCTTGGTGACGCAACAGGTCCAGGTATGGGAGGAGTTTGCACAGGTGAGCATTAAAGCCATGCTCTGGGAGAAGCACCTGAGAATGAGACACACAGGTACTTTGAACTCTACTCAGGGACGAAGAAGCAGAGCTCGCAATCAGGTGTGTCTGAAAGTGTCTGAAAACACCTGGAAGTGTCCGAGCTGATGCTCTCCAGCTTACTTCACTCAGTCAGTCTCTAGTTTATGGCTGTGTTGCAGTACTCTTATGACCTACCACTGGAAACCAAAGGTCATAAGAAGAGGTCAAAGCTCATCCTTCTCCATCTGCTTAAACGCCTCCAGGTCCTCCTGCCAATCAGCCATTAAAGAGTCTACTGACTGGCTGCTCGAGTCTTCATCCTCTGCAGGCTGCTCCTCCGCCGTCCCAGCAGCTGGGTCACTGCTCGGCTCCGCCTCTGGCTTCTCAGACTCCTCCCCCAAAATCTCTTGTTCGTGAGTGGTGAACTGTGATTGGTGGTCAGGGCTCGCGGAGATACTGGGGGTGGGGCTACTGTGGTCCTCTGTGCAGCAGTCCTCGTCTTCCTTTTCATCTCCACCTTAGAGAAAGTGATTGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69392 True 2441 lncRNA 0.42 2 11884009 11886479

Neighbor

gene id symbol gene type direction distance location
LOC103043198 grm6a,LOC108439669,LOC107601768,LOC107674373,LOC107653428,LOC107743101,LOC106566502 coding upstream 185046 11589324 ~ 11698963 (+)
nkx3-1 nkx3-1 coding upstream 596794 11284887 ~ 11287215 (+)
nkx2-6 nkx2-6,LOC107081961,LOC102231304,LOC103470093,LOC105012089,LOC106591187 coding upstream 624547 11255718 ~ 11259462 (+)
stc1 stc1,LOC107665189,LOC107747716,LOC107553168,LOC107559448 coding upstream 662885 11204075 ~ 11221124 (+)
LOC103034408 NA coding upstream 808179 11061148 ~ 11075830 (+)
npl npl coding downstream 24689 11911168 ~ 11921164 (+)
LOC103023153 sec22b,sec22bb,LOC108439390,LOC107548814,LOC107750823,LOC101168279,LOC100705437,LOC107676649 coding downstream 42819 11929298 ~ 11935136 (+)
LOC103041950 LOC108439388 coding downstream 79111 11965590 ~ 12065127 (+)
LOC103041649 slc35a3,LOC108439387,LOC107717552,LOC107585865 coding downstream 187152 12073631 ~ 12092223 (+)
LOC103041348 foxe3,foxe1,LOC103041348,LOC103130754 coding downstream 232434 12118913 ~ 12121673 (+)
G51429 NA non-coding upstream 116 11883467 ~ 11883893 (+)
G51424 NA non-coding upstream 52299 11830899 ~ 11831710 (+)
G51425 NA non-coding upstream 54164 11825493 ~ 11829845 (+)
G51411 NA non-coding upstream 114635 11768860 ~ 11769374 (+)
G51401 NA non-coding upstream 168394 11713747 ~ 11715615 (+)
G51427 NA non-coding downstream 15404 11901883 ~ 11928754 (+)
G51494 NA non-coding downstream 116541 12003020 ~ 12006092 (+)
G51493 NA non-coding downstream 182939 12069418 ~ 12071897 (+)
G51556 NA non-coding downstream 290295 12176774 ~ 12176989 (+)
G51558 NA non-coding downstream 297300 12183779 ~ 12183979 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other upstream 1988 11832681 ~ 11882021 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other upstream 1126754 10687885 ~ 10757255 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other upstream 1753208 10123720 ~ 10130801 (+)
G50889 grid2,LOC107556295 other upstream 2101288 9643374 ~ 9782721 (+)
G50583 LOC108437602,LOC103398889 other upstream 3539495 8342940 ~ 8344514 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other downstream 197601 12084080 ~ 12129300 (+)
znf692 znf692,LOC108442337,LOC107750903,LOC107695246,LOC106613837 other downstream 550925 12437404 ~ 12448516 (+)
G51743 dohh,LOC107745802,LOC107695215,LOC107585881,LOC107548993 other downstream 1429260 13315739 ~ 13327325 (+)
G51745 NA other downstream 1470246 13356725 ~ 13368274 (+)
LOC103034181 prrg1,LOC108444325,LOC107585847,LOC107657931,LOC107700656,LOC107750596 other downstream 2282965 14169444 ~ 14201302 (+)

Expression


Co-expression Network