LOC103022344 (foxd1,LOC103022344,LOC108265081,LOC106569011)


Basic Information

Item Value
gene id LOC103022344
gene name foxd1,LOC103022344,LOC108265081,LOC106569011
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 12084080 ~ 12129300 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU69525
ttatatatatatatatatatatatatatatatatatatttaggtgaGTGAGTTTGTGAAAAGCactgtacaataataataatgatgattataataatgataaaaaataataacagcagCGAGAGCGAAAACTCAGGTTGAACTCGTTTCTATGAAGAAGCACATGGTTGGAGAGTTGGACAGTGGGGTTGTAAATAGATCACCCAGGCTGACTCCCACTGCCCTCCCAACACGTGGCTGTGGTGGTGAATTTAgagttatttttatgtttattttatgtggCGTTGATGTAAATCGCATTACCTCTCATTTTGTTCTGTGCATAcagtcttattattattattatttacattgaaAATAATCTGTGAAGAGAATGTTGTTCTATGT
>XM_007245807.3
GGGCAACTGCACGAGCTGCTAAAAATCTTCTGGatgagataaataataaaaatacaaatgatAGTAAACAATGAAAGTTATTGTATAGTGGGGAAATAATActactaaaaagtaaaaagttcaTACTGCATGCAGGGCGCTATAGTTTCAGTTCtacaaatggtttaaaaaactgatttttgttagttttttttattatttttaaaccaaaagaaaagAATCCGCGCTTAAAAGAAGTGAGAGAGGGTGTATaggagtgtgcatgtgtgtttggaGGGGGTGGTCGGGGTAGGGGTGGGAGGGggcaagccaaaaaaaaagctacacTCGCGCCCAAGAGGCTGGACACGGAGCGCGAGAGCGTGCTAAGAAGAGACTGTCCGAGGATGACTCTGGGCACGGACGCGTCCGATAGCTCGGCGCCGTCCGCGGACGACGTGGAGGACATCGACGTGGTCGGCGGCGACGTGGCCACGACGCAGGACGCGAGGTACGCGCCGCGGCGCGCGCCCTTCAGACCGGATTTGGACGTGGACGTGGAGGACGACGTTGACGACGACGAGGACGACGAGGTTGACCTGGACGATGTACCTAGGCACGGGGTGCCAAACCAAGACGGCAGCGACGAGGGATTGGTCGTGGACGTCAGTGGCGGCGCGCAAAGTCCAGGCGACTCCGTGGCCACTGTCCCCACGGACAAGTCGTCCAAAAACGCGCTTGTGAAGCCGCCGTACTCGTACATCGCCCTGATCACCATGGCCATCCTGCAAAGCCCCAAGAAGCGCCTCACGCTCAGCGAGATCTGCGAGTTTATCAGTGGACGCTTCCCATACTACCGCGAGAAGTTTCCCGCGTGGCAGAACTCCATCCGTCACAACCTGTCTCTCAACGACTGCTTCGTGAAGATCCCACGCGAACCGGGTAACCCCGGAAAGGGCAACTATTGGACGCTGGACCCCGAGTCTGCGGACATGTTCGACAACGGCAGCTTCCTTCGGCGCCGCAAGCGTTTCAAGCGCCACCAGGGCGGCGACATCCTGCGGGACACTGGAGGCTTCCTCCCGGGATTTTACCCCCCTTACGGCTACGGCTACGGCCTCCATTTGCAAACCTTGCACGTGCCCCCTCCtcatcaccatcaccctcaccacCCTCACCATcctcaccaccatcaccacccttACCATCCAGCCCACACTGGGGCAACTTTCCCGTTCCAAGGCGGGCCGTGCGCCCTCGCTACGCCAACGTCCGTTTTCTCgccacctcctccaccaccacctccaccactgTCTTCATCGACTTCATCCCTTCTCGGGGCAGATCTGAGGAAGCCCTTCTACCCCGAGACAGGGGTGGTGGCACGAGCGCACAAGCTGGACTCTAGTGGTAATGGGACTGGAACCGGCACTGGTACTGGTAGCGCGCCCGGGCGCCCTTCTCCATTCTCCATAGACAACATCATTGGTGCCGCGCCTCCGCCATCCTACAGCCCAAACGCGGCGGCTCAAGTGTTGGCCGTGATCGCGCCCTCGCTCGCGCCCTCGCTTGCGCCGCCACAGCTGCGCAATCAGACTTTCTCCAGCAAGAACCTGAACGGCTGCCACTTCTGACTGGACTTGAACTTGAAGCagccttttttattgtttagagAAAAGACAGACAAAACTCGTTTCATAAGGTAGGATTGACATTTCGTGTTTTGATTTTGGGATAAAGTCTCAGTTTATTCTCTTCTGAGGGTGGGGGATAATGGATTGAGGGGCACAGTATTGCTGGATTCTGATATTATGGGACGTCAggtaatgtagaaaatacaaatgttttaaaaatgccaACTTTACAGTAAAAGGAtaaggtttatttaaaaaatatatattattcgGAGCATTTATTTTGGTCGATTCGTCGTGAAAATGTGCACCATATAAAGAAAGCAAAAGTACAtagaatgacaaaaaaatgtgtAGTCACGTCAGATCCATTCTGAGTTTGTTCAATAAATAGTTCAATAGACTTAACAAATGGAAAAACAGATAGGTGCTATTGCTTAAACATACCATTATCTGTTTTCATTTTGTAAACGAACTACTCATATTATAGTAACCAAATACttttgatttaaatattttttattttacattttagaaagtaaattaaaataataattttgaacATTGAAGAAAAACTCAAAGCGACCTTTAAAACGAAATTCAATCTAAATTCAGTAAGAGCATTCCGGGGTTACTGACACTTAATAAACAAAGCCTTGTTTGTTCAAAGTAAATGCACTTAATTATTTCTTTCTACATAGAcaaaaagtaaaactaaaaaatcttGAAATGCAAAAcgcattttattttactgtgggaAAATTAAAATCAAAGTAAACTATTGAAACTGATGTCCCATAATATCTGATTTACCCCGCAAATAATTAGGTTATATTTATGAACTGTAAATATGTACAATAGAAACATCTCGAAGGCACACAATGTAAGATCATTATAAAAACAGTTTGAGGTTAAAAGGTTAAAATTTCACCCTCCAGAATATTGGACAAGAAACACGCCCCCATCCATTTCTCTCGTTGTCCTGGAACCCCTGTCCGTGGGCTTTAATGAAGATTGTCATTGCTATTGTaatggtttatatatatatatatttaggtgaGTGAGTTTGTGAAAAGCactgtacaataataataatgatgattataataatgataaaaaataataacagcagCGAGAGCGAAAACTCAGGTTGAACTCGTTTCTATGAAGAAGCACATGGTTGGAGAGTTGGACAGTGGGGTTGTAAATAGATCACCCAGGCTGACTCCCACTGCCCTCCCAACACGTGGCTGTGGTGGTGAATTTAgagttatttttatgtttattttatgtggCGTTGATGTAAATCGCATTACCTCTCATTTTGTTCTGTGCATAcagtcttattattattattatttacattgaaAATAATCTGTGAAGAGAATGTTGTTCTATGTGTAAAGACGGATACAACCCGTCATGTCCATAGGTCATTTTGTTGTAAtgataagaaaataaatgttttgtgaaTTTGAAAAAA

Function

symbol description
foxd1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in central nervous system; head; immature eye; and neural crest. Orthologous to human FOXD1 (forkhead box D1).

NR:

description
forkhead box protein D2

GO: NA

KEGG:

id description
K09397 FOXD; forkhead box protein D

RNA

RNA id representative length rna type GC content exon number start site end site
TU69525 False 386 lncRNA 0.32 2 12084080 12129217
XM_007245807.3 True 3096 mRNA 0.45 1 12126205 12129300

Neighbor

gene id symbol gene type direction distance location
LOC103041950 LOC108439388 coding upstream 18953 11965590 ~ 12065127 (+)
LOC103023153 sec22b,sec22bb,LOC108439390,LOC107548814,LOC107750823,LOC101168279,LOC100705437,LOC107676649 coding upstream 148944 11929298 ~ 11935136 (+)
npl npl coding upstream 162916 11911168 ~ 11921164 (+)
LOC103043198 grm6a,LOC108439669,LOC107601768,LOC107674373,LOC107653428,LOC107743101,LOC106566502 coding upstream 385117 11589324 ~ 11698963 (+)
nkx3-1 nkx3-1 coding upstream 796865 11284887 ~ 11287215 (+)
LOC103047368 fcho1,LOC108442339,LOC107548880,LOC107717548,LOC107676711 coding downstream 322120 12451420 ~ 12538729 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759 coding downstream 475965 12605265 ~ 12644596 (+)
LOC103044019 LOC108439652,LOC108264986,LOC106584369,LOC107585931 coding downstream 717765 12847065 ~ 12876713 (+)
LOC103040421 mob3a,LOC108439653,LOC103368804,LOC100699828,LOC104921817,LOC102783145,LOC104944351,LOC103137270 coding downstream 749336 12878636 ~ 12894487 (+)
mknk2 mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 coding downstream 777946 12907246 ~ 12932059 (+)
G51493 NA non-coding upstream 12183 12069418 ~ 12071897 (+)
G51494 NA non-coding upstream 77988 12003020 ~ 12006092 (+)
G51427 NA non-coding upstream 155326 11901883 ~ 11928754 (+)
G51428 NA non-coding upstream 197601 11884009 ~ 11886479 (+)
G51429 NA non-coding upstream 200187 11883467 ~ 11883893 (+)
G51556 NA non-coding downstream 47474 12176774 ~ 12176989 (+)
G51558 NA non-coding downstream 54479 12183779 ~ 12183979 (+)
G51569 NA non-coding downstream 268303 12397603 ~ 12447640 (+)
G51580 NA non-coding downstream 334668 12463968 ~ 12545418 (+)
G51581 NA non-coding downstream 385085 12514385 ~ 12515605 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other upstream 202059 11832681 ~ 11882021 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other upstream 1326825 10687885 ~ 10757255 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other upstream 1953279 10123720 ~ 10130801 (+)
G50889 grid2,LOC107556295 other upstream 2301359 9643374 ~ 9782721 (+)
G50583 LOC108437602,LOC103398889 other upstream 3739566 8342940 ~ 8344514 (+)
znf692 znf692,LOC108442337,LOC107750903,LOC107695246,LOC106613837 other downstream 308104 12437404 ~ 12448516 (+)
G51743 dohh,LOC107745802,LOC107695215,LOC107585881,LOC107548993 other downstream 1186439 13315739 ~ 13327325 (+)
G51745 NA other downstream 1227425 13356725 ~ 13368274 (+)
LOC103034181 prrg1,LOC108444325,LOC107585847,LOC107657931,LOC107700656,LOC107750596 other downstream 2040144 14169444 ~ 14201302 (+)
G52110 sh3gl1,sh3gl1b other downstream 2177314 14306614 ~ 14324917 (+)

Expression


Co-expression Network