G51583


Basic Information

Item Value
gene id G51583
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 12540224 ~ 12543950 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU69590
GGGCACTTTAAATAGGAACCACACATTTCACAGGTGGGTTGAAATAAATGCACAGATTCAGTATCAGAGATGTCGAGGCGATATCGAGAAAAATAACGTGTGCATATATTTTCTCTAACAGGAACTAACTGTGTCTATTTGGCGACGCCTTAAATCTGGTTACACAGCCTGAAGTCTGAACTCTATAAACGTAAAAATTCTTCTAAACTGAACAAACTGAGATCTGTTATATCCGTTTTTACTAAAGTACGGAAGATCTACTTcaaaatattacagtttttttaaaaaagagaatcTCCACActcgtgaaaaaaaaaaaaaaaaaaaaaagtctgactCTGGTAAATACATTCGATTAAAAACAACGTTtgaacaacatttttaaaacatgcgtccaacaaacaaaccaactCACTTCCAGTTATGTTAAATGGTCATTTACAGACATTCTGTCAGGGTCcgcaaaaatttaaaaagaccCCCCTCCCTCTGCCCTTTAAAATTCACAACTTTTAGAAGCTCTCAACTAACATGCAGAACCGGACTGAAGAGTGAATCTGACTATCTGAGAAGAGAAGAAGCTCTCTACACTGTCTACGTTCCTCCAGACTGGATAAACTGGCGGTTCAGGCCTTTATATAGAGTGAGgaactctctctatctctaccaCCCGTCACCATAAACATCGGTAAGCTTATTTACATCGGAGAACAAACAGGAGGCCTGGGGGGCGGGGCGGCCGTAGGCTGTTGAACACTGACTTCATCAGCTTTGACTGTACACTCCTCTCCTCTACACTCATACATAAAAATTATAAGGTGCTACACAAAAGATTCTTTAAGCAATTCCACTTTTAAGGAAGAACCACCAATTTTTTGGTTTCCAGAAAGATTTTACCATTTTTCTCCCAAGCAAGTCTGTAAATCTTTACGGAAGCTCAGAGTGGATCAGTAGACTAAGACGCTGACACTATGGCCAGAACTTCATAAAtcctggtttgaatcctgggtCATACTGGGACTatagcatcagcagccagagacagagaaaaaaaggctaaaaaggAGGAATTGGGACATACTGGGACAATGGCATCAGCAGCTAgagccagagagaaagagagtgaaagacgGCAATTGGGACATACTGGGACtatggcatcagcagccggagaaagagagtgaaaaagagcaaTTGAGACCTACTGGGACTATGgcaagagagtgaaaaagagcaaTTGAGACATACTGGGACTATGGCaagagagtgaaagagagcaaTTGAGACATACTGGGACATACTGGGACTATGGAatcagcagagagaaagagattgaaaAAGAGCAATTGGGACATACTGGGACtatggcatcagcagccagagccagagagaaagagattgaaaGACAGCAATTGGGACATACTGGGACTACGTTAAGAGAGTGAAAAAGGGCAATTGGGACATACTGGAACAATGGCatcagcagagagaaagagagtgtaagagagtaACTGAGACATACTGTGACTATGGCAAGAGAATGAAAGAGGGCAATTTGGGACATACTGGGTCATACTGGGACTatagcatcagcagccagaaccagagagaaagagagagaaagtcagCAATTGGGAAATACCGGGACtatggcatcagcagccagagccagagagaaagagagtgaaagagggctttcctctgagtgcagtTGGTGGAAGTTGGGAAAAGGGGCGGTGTCTATCCTctcatgtattggaggaggcatgctCTTGCCCTTACTACTCTCTCCTTACTAGTGTTGGGAGCACTGTACAgaattaaaaaggcttttttttttttttttttttactttgtggcACTGCTTAAAGAATCGATCGTAGACCcttgttttcttaattttctaTTTAAGAGAGTATAATTTTATAATGGCGTGTCTGACCAGTTTGcttacacacaaataaaaaaaaaattaataataataattaaaaaacactacagaaacacacacacactcacacaaaaatTAGCATAGAAACAGTTGAGGTATCGACAGCTCATCTCATATGGCCAGGgggtcgttttttttttcttatattttctttaattttatacatAGCTTTTTGTCTTAGAAAGAAACAGCGACTTATATATCAGTATATCGGCCCTCCGTGTCTTTGCTCTTTGCCACGGCGGCGAGAGGAGGTTTGCAGTGCTGGTGGGGCTGAAGCACGAAAGGCTGCTTTGGGTTAGTGGGGTTGCAttacgttgttttttttttctttttttcttttctttaaatcaTCGAACGCGAGCGAACGGAGCCACAGCTACAGGAAAAATAAGCCCTACGGCCTCGGCGCAGAAGGTGCTGGAGACAGCTGAGGTCATGAGACAATACATTCGTACTGCGGATTACAGGCACGGCCCGGGAACAGCGACTGACTGCTGGAGTGTTTTCTGCTCTTATCTAAGGCACTGGAAAGGACACTATGGCAcagaaaggcttttttttttttttttaaacacacatacaaacacagagCAAGTGTAACATTATGACTACTTCCTTGTTCCTACACCTTATTATCCATTTGTTAATCTCTATTGAGGATACAGGACActtttatatagttatatacacGCAtatcccactttataataagtgtccctaagtactatgtagttacattgTAACactccatgtaactacagtgtaactactgattaAGTACACATAGTTACAGAtcaactacagaggtacaggttatgtaattacacatgtgtattaaggttaatcctgacttgtgtaagtacacttgtgTACCAgggtgtgtgtacttacacaagtgtaacaatgtgtgtgtacttacatatatgtaatagtgtgtgtgataagttgagtataaacttatccaacagctattgtctagaatgtaattagggctgtgtAAGTACctatgtgtaagtacacatgtgtaagtacactcgccctggtacacatgtgtacttacacaagtcaatattaaccttaatacacatgtgtaattacataacctgta
>TU69591
GGGCACTTTAAATAGGAACCACACATTTCACAGGTGGGTTGAAATAAATGCACAGATTCAGTATCAGAGATGTCGAGGCGATATCGAGAAAAATAACGTGTGCATATATTTTCTCTAACAGGAACTAACTGTGTCTATTTGGCGACGCCTTAAATCTGGTTACACAGCCTGAAGTCTGAACTCTATAAACGTAAAAATTCTTCTAAACTGAACAAACTGAGATCTGTTATATCCGTTTTTACTAAAGTACGGAAGATCTACTTcaaaatattacagtttttttaaaaaagagaatcTCCACActcgtgaaaaaaaaaaaaaaaaaaaaaagtctgactCTGGTAAATACATTCGATTAAAAACAACGTTtgaacaacatttttaaaacatgcgtccaacaaacaaaccaactCACTTCCAGTTATGTTAAATGGTCATTTACAGACATTCTGTCAGGGTCcgcaaaaatttaaaaagaccCCCCTCCCTCTGCCCTTTAAAATTCACAACTTTTAGAAGCTCTCAACTAACATGCAGAACCGGACTGAAGAGTGAATCTGACTATCTGAGAAGAGAAGAAGCTCTCTACACTGTCTACGTTCCTCCAGACTGGATAAACTGGCGGTTCAGGCCTTTATATAGAGTGAGgaactctctctatctctaccaCCCGTCACCATAAACATCGGTAAGCTTATTTACATCGGAGAACAAACAGGAGGCCTGGGGGGCGGGGCGGCCGTAGGCTGTTGAACACTGACTTCATCAGCTTTGACTGTACACTCCTCTCCTCTACACTCATACATAAAAATTATAAGGTGCTACACAAAAGATTCTTTAAGCAATTCCACTTTTAAGGAAGAACCACCAATTTTTTGGTTTCCAGAAAGATTTTACCATTTTTCTCCCAAGCAAGTCTGTAAATCTTTACGGAAGCTCAGAGTGGATCAGTAGACTAAGACGCTGACACTATGGCCAGAACTTCATAAAtcctggtttgaatcctgggtCATACTGGGACTatagcatcagcagccagagacagagaaaaaaaggctaaaaaggAGGAATTGGGACATACTGGGACAATGGCATCAGCAGCTAgagccagagagaaagagagtgaaagacgGCAATTGGGACATACTGGGACtatggcatcagcagccggagaaagagagtgaaaaagagcaaTTGAGACCTACTGGGACTATGgcaagagagtgaaaaagagcaaTTGAGACATACTGGGACTATGGCATCATCAGCCGGAgccagagaggaagagagtgaaagagggcAATTGGAACATACTGGGACTATGGCATCAGCAGCTGaggccagagagaaagagagtgaaagagagcaaTTGAGACATACTGGGACATACTGGGACTATGGAatcagcagagagaaagagattgaaaAAGAGCAATTGGGACATACTGGGACtatggcatcagcagccagagccagagagaaagagattgaaaGACAGCAATTGGGACATACTGGGACTACGTTAAGAGAGTGAAAAAGGGCAATTGGGACATACTGGAACAATGGCaagagagtgaaagagggctttcctctgagtgcagtTGGTGGAAGTTGGGAAAAGGGGCGGTGTCTATCCTctcatgtattggaggaggcatgctCTTGCCCTTACTACTCTCTCCTTACTAGTGTTGGGAGCACTGTACAgaattaaaaaggcttttttttttttttttttttactttgtggcACTGCTTAAAGAATCGATCGTAGACCcttgttttcttaattttctaTTTAAGAGAGTATAATTTTATAATGGCGTGTCTGACCAGTTTGcttacacacaaataaaaaaaaaattaataataataattaaaaaacactacagaaacacacacacactcacacaaaaatTAGCATAGAAACAGTTGAGGTATCGACAGCTCATCTCATATGGCCAGGgggtcgttttttttttcttatattttctttaattttatacatAGCTTTTTGTCTTAGAAAGAAACAGCGACTTATATATCAGTATATCGGCCCTCCGTGTCTTTGCTCTTTGCCACGGCGGCGAGAGGAGGTTTGCAGTGCTGGTGGGGCTGAAGCACGAAAGGCTGCTTTGGGTTAGTGGGGTTGCAttacgttgttttttttttctttttttcttttctttaaatcaTCGAACGCGAGCGAACGGAGCCACAGCTACAGGAAAAATAAGCCCTACGGCCTCGGCGCAGAAGGTGCTGGAGACAGCTGAGGTCATGAGACAATACATTCGTACTGCGGATTACAGGCACGGCCCGGGAACAGCGACTGACTGCTGGAGTGTTTTCTGCTCTTATCTAAGGCACTGGAAAGGACACTATGGCAcagaaaggcttttttttttttttttaaacacacatacaaacacagagCAAGTGTAACATTATGACTACTTCCTTGTTCCTACACCTTATTATCCATTTGTTAATCTCTATTGAGGATACAGGACActtttatatagttatatacacGCAtatcccactttataataagtgtccctaagtactatgtagttacattgTAACactccatgtaactacagtgtaactactgattaAGTACACATAGTTACAGAtcaactacagaggtacaggttatgtaattacacatgtgtattaaggttaatcctgacttgtgtaagtacacttgtgTACCAgggtgtgtgtacttacacaagtgtaacaatgtgtgtgtacttacatatatgtaatagtgtgtgtgataagttgagtataaacttatccaacagctattgtctagaatgtaattagggctgtgtAAGTACctatgtgtaagtacacatgtgtaagtacactcgccctggtacacatgtgtacttacacaagtcaatattaaccttaatacacatgtgtaattacataacctgta
>TU69594
GGGCACTTTAAATAGGAACCACACATTTCACAGGTGGGTTGAAATAAATGCACAGATTCAGTATCAGAGATGTCGAGGCGATATCGAGAAAAATAACGTGTGCATATATTTTCTCTAACAGGAACTAACTGTGTCTATTTGGCGACGCCTTAAATCTGGTTACACAGCCTGAAGTCTGAACTCTATAAACGTAAAAATTCTTCTAAACTGAACAAACTGAGATCTGTTATATCCGTTTTTACTAAAGTACGGAAGATCTACTTcaaaatattacagtttttttaaaaaagagaatcTCCACActcgtgaaaaaaaaaaaaaaaaaaaaaagtctgactCTGGTAAATACATTCGATTAAAAACAACGTTtgaacaacatttttaaaacatgcgtccaacaaacaaaccaactCACTTCCAGTTATGTTAAATGGTCATTTACAGACATTCTGTCAGGGTCcgcaaaaatttaaaaagaccCCCCTCCCTCTGCCCTTTAAAATTCACAACTTTTAGAAGCTCTCAACTAACATGCAGAACCGGACTGAAGAGTGAATCTGACTATCTGAGAAGAGAAGAAGCTCTCTACACTGTCTACGTTCCTCCAGACTGGATAAACTGGCGGTTCAGGCCTTTATATAGAGTGAGgaactctctctatctctaccaCCCGTCACCATAAACATCGGTAAGCTTATTTACATCGGAGAACAAACAGGAGGCCTGGGGGGCGGGGCGGCCGTAGGCTGTTGAACACTGACTTCATCAGCTTTGACTGTACACTCCTCTCCTCTACACTCATACATAAAAATTATAAGGTGCTACACAAAAGATTCTTTAAGCAATTCCACTTTTAAGGAAGAACCACCAATTTTTTGGTTTCCAGAAAGATTTTACCATTTTTCTCCCAAGCAAGTCTGTAAATCTTTACGGAAGCTCAGAGTGGATCAGTAGACTAAGACGCTGACACTATGGCCAGAACTTCATAAAtcctggtttgaatcctgggtCATACTGGGACTatagcatcagcagccagagacagagaaaaaaaggctaaaaaggAGGAATTGGGACATACTGGGACAATGGCATCAGCAGCTAgagccagagagaaagagagtgaaagacgGCAATTGGGACATACTGGGACtatggcatcagcagccggagaaagagagtgtaagagagtaACTGAGACATACTGTGACTATGGCAAGAGAATGAAAGAGGGCAATTTGGGACATACTGGGTCATACTGGGACTatagcatcagcagccagaaccagagagaaagagagagaaagtcagCAATTGGGAAATACCGGGACtatggcatcagcagccagagccagagagaaagagagtgaaagagggctttcctctgagtgcagtTGGTGGAAGTTGGGAAAAGGGGCGGTGTCTATCCTctcatgtattggaggaggcatgctCTTGCCCTTACTACTCTCTCCTTACTAGTGTTGGGAGCACTGTACAgaattaaaaaggcttttttttttttttttttttactttgtggcACTGCTTAAAGAATCGATCGTAGACCcttgttttcttaattttctaTTTAAGAGAGTATAATTTTATAATGGCGTGTCTGACCAGTTTGcttacacacaaatttaaaaaaattaagtaactcaactcagtttcaagacttaaatgttacatagagtagttcttttattaaactatacttaatttatttttgctgaatcaatcctttcttttagtaactttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69590 True 3062 lncRNA 0.40 2 12540224 12543374
TU69591 False 2952 lncRNA 0.40 2 12540224 12543374
TU69594 False 1764 lncRNA 0.40 3 12540224 12543950

Neighbor

gene id symbol gene type direction distance location
LOC103047368 fcho1,LOC108442339,LOC107548880,LOC107717548,LOC107676711 coding upstream 1495 12451420 ~ 12538729 (+)
LOC103041348 foxe3,foxe1,LOC103041348,LOC103130754 coding upstream 418551 12118913 ~ 12121673 (+)
LOC103041649 slc35a3,LOC108439387,LOC107717552,LOC107585865 coding upstream 448001 12073631 ~ 12092223 (+)
LOC103041950 LOC108439388 coding upstream 475097 11965590 ~ 12065127 (+)
LOC103023153 sec22b,sec22bb,LOC108439390,LOC107548814,LOC107750823,LOC101168279,LOC100705437,LOC107676649 coding upstream 605088 11929298 ~ 11935136 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759 coding downstream 61315 12605265 ~ 12644596 (+)
LOC103044019 LOC108439652,LOC108264986,LOC106584369,LOC107585931 coding downstream 303115 12847065 ~ 12876713 (+)
LOC103040421 mob3a,LOC108439653,LOC103368804,LOC100699828,LOC104921817,LOC102783145,LOC104944351,LOC103137270 coding downstream 334686 12878636 ~ 12894487 (+)
mknk2 mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 coding downstream 363296 12907246 ~ 12932059 (+)
rexo1 NA coding downstream 393910 12937860 ~ 12957220 (+)
G51582 NA non-coding upstream 24340 12515101 ~ 12515884 (+)
G51581 NA non-coding upstream 24619 12514385 ~ 12515605 (+)
G51569 NA non-coding upstream 92584 12397603 ~ 12447640 (+)
G51558 NA non-coding upstream 356245 12183779 ~ 12183979 (+)
G51556 NA non-coding upstream 363235 12176774 ~ 12176989 (+)
G51588 NA non-coding downstream 79646 12623596 ~ 12648417 (+)
G51589 NA non-coding downstream 108047 12651997 ~ 12653438 (+)
G51604 NA non-coding downstream 154839 12698789 ~ 12739607 (+)
G51682 NA non-coding downstream 291792 12835742 ~ 13290053 (+)
G51689 NA non-coding downstream 340537 12884487 ~ 12886889 (+)
znf692 znf692,LOC108442337,LOC107750903,LOC107695246,LOC106613837 other upstream 91708 12437404 ~ 12448516 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other upstream 410924 12084080 ~ 12129300 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other upstream 658203 11832681 ~ 11882021 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other upstream 1782969 10687885 ~ 10757255 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other upstream 2409423 10123720 ~ 10130801 (+)
G51743 dohh,LOC107745802,LOC107695215,LOC107585881,LOC107548993 other downstream 771789 13315739 ~ 13327325 (+)
G51745 NA other downstream 812775 13356725 ~ 13368274 (+)
LOC103034181 prrg1,LOC108444325,LOC107585847,LOC107657931,LOC107700656,LOC107750596 other downstream 1625494 14169444 ~ 14201302 (+)
G52110 sh3gl1,sh3gl1b other downstream 1762664 14306614 ~ 14324917 (+)
G52249 NA other downstream 2374494 14918444 ~ 14918850 (+)

Expression


Co-expression Network