G51589


Basic Information

Item Value
gene id G51589
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 12651997 ~ 12653438 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU69604
CGGCTGATTTCTTGCTctgggagaaaatgagagagtcAGAAGCACAGTGAACTAATCGGTTGGAGGGTGCGGTGTTTCACAAAGCAGGATTTTACAGCCTCAACAATGTTTGCCTTCTCAATACTGATATAGAAGGAGTTACTTAATTTGAATCAAATTCATTGTAAGCAACTTGACTAAACACTGATCCAaatatttttggtgttttgaactgatttataaaaaacaacacagatCTGGCTTAAGACTAGGGATGCTAATAGAACTGACCCAAATAAACCTTCAGCAAAATAGTCCTTTACTTCTTATTTTAACCCAATCTGACTAAATTGCAATGCCAACAAAGAATCACAATTGCAGTTTTGCTTAAGACTAAACCAGGAcaggcgccgagtggtccagcggtcttaagcgctgccactatgagcgggaggtcgcaggttcgaacccccgctcatgcagctttgccatctacctgctccctccgggtgggtagatggcgctctctccccacatccaagtcgctttgctttcctctgagcgcgctgtgatgctgcatcaacagcagcttgaaaagaagcggtggctgacttcacatgtatcggaggaagcatgtgttagtcttcaccctcctggtgtgttgggacattaccagtgatagggggagtcctaatgagtgggttgggtaattggccatttaaattgggagaaaatgggaaaaaaacaacaggacTAATCCAATCTGGTCCACCACCATAGCATTTTGAATCCcagttttaatcaaataaaagtagcttgttttagaataaaaacacgATTTTAAAAGGATTAGTGGGAATCTGAAGCTATCAGAAAGATGAATCACTGAGAAAGGTGAAGAATAATGTGAAtgaagtgctaaaaaaaaataaccagtaCCCTGATAGCCTTGTGTTCAAATCCAGAGACTAAACGCTAACCTGACAAATATACATGACTTACAGTATAATGATTTATATAACAGACCTGTAAAATAACAAACTGCAgattaaacaaagaaaacaaactaaaatagaaaatagctTTGGGATATAAGTCTGTTGTACAGTAGTGTAATGCAGGCTATCCTAAACCTCTCTGAATCAGGCGGAGCTTCACTGCACTCTTAAAACACAAATGGTGCTATAAAGGTTTCTTCAAGAGGTGCCATAAAAGAAGCAGTTTTTGAACAGAAGCTGTGTAAAGAACATTTAGGCCATCTTAAACCACAGATATGTCGTATTCTGTTATTAGCCCATACTTGTGGAGTCTCACAGGGCTCTTTTTTTTAAGGCCTTAGTAATTTCTGATATGAATGTAGTTCACTGAAGTGTGGGCTTACTTACTTAGGGTTTAAGGAgttaaactga

Function

NR:

description
PREDICTED: homeobox protein Hox-C10a

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69604 True 1388 lncRNA 0.40 2 12651997 12653438

Neighbor

gene id symbol gene type direction distance location
acsbg2 acsbg2,LOC107731199,LOC107676759 coding upstream 7401 12605265 ~ 12644596 (+)
LOC103047368 fcho1,LOC108442339,LOC107548880,LOC107717548,LOC107676711 coding upstream 113268 12451420 ~ 12538729 (+)
LOC103041348 foxe3,foxe1,LOC103041348,LOC103130754 coding upstream 530324 12118913 ~ 12121673 (+)
LOC103041649 slc35a3,LOC108439387,LOC107717552,LOC107585865 coding upstream 559774 12073631 ~ 12092223 (+)
LOC103041950 LOC108439388 coding upstream 586870 11965590 ~ 12065127 (+)
LOC103044019 LOC108439652,LOC108264986,LOC106584369,LOC107585931 coding downstream 193627 12847065 ~ 12876713 (+)
LOC103040421 mob3a,LOC108439653,LOC103368804,LOC100699828,LOC104921817,LOC102783145,LOC104944351,LOC103137270 coding downstream 225198 12878636 ~ 12894487 (+)
mknk2 mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 coding downstream 253808 12907246 ~ 12932059 (+)
rexo1 NA coding downstream 284422 12937860 ~ 12957220 (+)
LOC103042874 LOC108415051 coding downstream 319482 12972920 ~ 12978309 (+)
G51588 NA non-coding upstream 3580 12623596 ~ 12648417 (+)
G51580 NA non-coding upstream 106579 12463968 ~ 12545418 (+)
G51583 NA non-coding upstream 108047 12540224 ~ 12543950 (+)
G51582 NA non-coding upstream 136113 12515101 ~ 12515884 (+)
G51581 NA non-coding upstream 136392 12514385 ~ 12515605 (+)
G51604 NA non-coding downstream 45351 12698789 ~ 12739607 (+)
G51682 NA non-coding downstream 182304 12835742 ~ 13290053 (+)
G51689 NA non-coding downstream 231049 12884487 ~ 12886889 (+)
G51687 NA non-coding downstream 269109 12922547 ~ 12923902 (+)
G51708 NA non-coding downstream 439736 13093174 ~ 13093548 (+)
znf692 znf692,LOC108442337,LOC107750903,LOC107695246,LOC106613837 other upstream 203481 12437404 ~ 12448516 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other upstream 522697 12084080 ~ 12129300 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other upstream 769976 11832681 ~ 11882021 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other upstream 1894742 10687885 ~ 10757255 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other upstream 2521196 10123720 ~ 10130801 (+)
G51743 dohh,LOC107745802,LOC107695215,LOC107585881,LOC107548993 other downstream 662301 13315739 ~ 13327325 (+)
G51745 NA other downstream 703287 13356725 ~ 13368274 (+)
LOC103034181 prrg1,LOC108444325,LOC107585847,LOC107657931,LOC107700656,LOC107750596 other downstream 1516006 14169444 ~ 14201302 (+)
G52110 sh3gl1,sh3gl1b other downstream 1653176 14306614 ~ 14324917 (+)
G52249 NA other downstream 2265006 14918444 ~ 14918850 (+)

Expression


Co-expression Network