G51687


Basic Information

Item Value
gene id G51687
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 12922547 ~ 12923902 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU69724
CAACCAACACAAACATGCTGGGGAATTCGGAGTTCTGCTTAAGGGCAGCATGCCCGCCCCAGAGGCTGATGCAAGCCTCCGACACCACCGCGCTCGGTGCCAGCTGAGCAGCCACTTCCTCGTCACATGGGCAGGAAAGCCCCGCATTTGCCCTGCCagtaatgctgctgctgctgcatgtgTCAGGTGACTGTGTGTATATCTGCTGTATCTGAGTCCTGCAGCGATATCACCCGCCTGCCTGTGCCTCAGGATCTGCCTGATGCAAGGCTTCACTAGTTTTACACCATTAGAGATGAGCAGGGTAAAATCTGCAGTACAGGGTAGCTAGATGGCTAGCGTTcaccccccccctcctctcCCCCTCTTATCAAACGCTAGCACAGATAGCCTCCGTATCTCTGGGGCTGTAGATTCCAGAGCAGAACTGCTGAGAAACATGATACGCAGTTGTTGGTTAAGGACAAGCAGGGTTCTTACTGCTGAATACTCAGCACAGGAGCTGGGAGCTTGGCatgaacaaatatatatatatatatatatatattatgttcatgcccaatatatatatatatctcacacAGTGAATAGAATGATAAGCATGATTGAATGTTATGAATAGGAAATATGTGTGGAATGGAGTAGCAGTAATAGCATGTTAGAAGATGTCAATAGAAGTAGAATGGAATGATGAGGGGGAATAGAAGGTTAAGAATATGTAATATTAAGAGAAgtacaaaaatgttataatgttaaAAGCATAGAAGTGAATAGTAGAATTTAAACAGACTTTTTAAGGGGTATAGAATATAATGTCATTGCATGTATTTATAGAATTTAAAGTGATAGAATGTtaacaattatattatttacttcATAACCCCTTTATATAAACATTGCATCTTATTTTAAGTGGTATGGAGCAATATTATGCAGTACAgaagtatatattataaataaaagaagataTCAAAAAAGAATATCAAAAGAAATCAAATGTTAGGAAATGTCCAAGATTACTGAGTAAACATATACAATGGATTATAATGTTAATCCAGATTGAACAGAATGTTATGGAAAATGGAACATGACAGAAAGTAGAGTGGAATGTCGGGGAACAGTATGGAGTTGAGTTGTAATGGGAAAGGATGTTGAGGGAAATGGTACGTTATCCATTGTTTGATCTCGGCGTTCCGCTTCcatctgctggtgctgctgggaATAGTTAATGGTGGTGTTTATGCTATCAGCTGGAGCAGGTCGGGGTTTCTTTGTTAGGACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69724 True 1282 lncRNA 0.41 2 12922547 12923902

Neighbor

gene id symbol gene type direction distance location
LOC103040421 mob3a,LOC108439653,LOC103368804,LOC100699828,LOC104921817,LOC102783145,LOC104944351,LOC103137270 coding upstream 28060 12878636 ~ 12894487 (+)
LOC103044019 LOC108439652,LOC108264986,LOC106584369,LOC107585931 coding upstream 45834 12847065 ~ 12876713 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759 coding upstream 277951 12605265 ~ 12644596 (+)
LOC103047368 fcho1,LOC108442339,LOC107548880,LOC107717548,LOC107676711 coding upstream 383818 12451420 ~ 12538729 (+)
LOC103041348 foxe3,foxe1,LOC103041348,LOC103130754 coding upstream 800874 12118913 ~ 12121673 (+)
rexo1 NA coding downstream 13958 12937860 ~ 12957220 (+)
LOC103042874 LOC108415051 coding downstream 49018 12972920 ~ 12978309 (+)
csnk1g2 csnk1g2,LOC106925954,LOC106953035,LOC103468226,LOC104921814 coding downstream 57070 12980972 ~ 13031555 (+)
mfsd12 mfsd12,LOC107550005 coding downstream 111976 13035878 ~ 13050527 (+)
nfic nfic,LOC107585880,LOC107676860,LOC107745803 coding downstream 175119 13099021 ~ 13294194 (+)
G51689 NA non-coding upstream 35658 12884487 ~ 12886889 (+)
G51604 NA non-coding upstream 182940 12698789 ~ 12739607 (+)
G51589 NA non-coding upstream 269109 12651997 ~ 12653438 (+)
G51588 NA non-coding upstream 274130 12623596 ~ 12648417 (+)
G51583 NA non-coding upstream 378597 12540224 ~ 12543950 (+)
G51708 NA non-coding downstream 169272 13093174 ~ 13093548 (+)
G51713 NA non-coding downstream 181982 13105884 ~ 13106608 (+)
G51724 NA non-coding downstream 236277 13160179 ~ 13165729 (+)
G51726 NA non-coding downstream 243792 13167694 ~ 13175028 (+)
G51732 NA non-coding downstream 262307 13186209 ~ 13193149 (+)
znf692 znf692,LOC108442337,LOC107750903,LOC107695246,LOC106613837 other upstream 474031 12437404 ~ 12448516 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other upstream 793247 12084080 ~ 12129300 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other upstream 1040526 11832681 ~ 11882021 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other upstream 2165292 10687885 ~ 10757255 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other upstream 2791746 10123720 ~ 10130801 (+)
G51743 dohh,LOC107745802,LOC107695215,LOC107585881,LOC107548993 other downstream 391837 13315739 ~ 13327325 (+)
G51745 NA other downstream 432823 13356725 ~ 13368274 (+)
LOC103034181 prrg1,LOC108444325,LOC107585847,LOC107657931,LOC107700656,LOC107750596 other downstream 1245542 14169444 ~ 14201302 (+)
G52110 sh3gl1,sh3gl1b other downstream 1382712 14306614 ~ 14324917 (+)
G52249 NA other downstream 1994542 14918444 ~ 14918850 (+)

Expression


Co-expression Network