G51840


Basic Information

Item Value
gene id G51840
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 13312031 ~ 13322430 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU69926
CCAAACTCattaactcatccccaactcctcaactcatccccaacttctcAACTAATtccaaactcctcaactcattccAAACTTCTTAACTCACCTCCAACTGCTCAACTAATTCCAAActcttcaactcatcccaaactgcTCAACTAATTTTAAACTCCTCAATCATTTTCAAACTCCTTAACTCATTCCCAGCTCctcaactcattcccaactcctcAACTAATTTTAAActtctcaactcatcccaaaatccTCATCAAATTCTAAAAAACTCTTCAGCTCCTTAACTAACTCTAAACTTCTCAACTCATCCAAagtcctcaactcatccccaactcctcaactaaTTCCAAACTCCTCacttcatccccaactcctcacttcatccccaactcctcaactcatccccaactcatccccaactcatcccgaCTCCTCAACTAATTTCAAGCTCCTCCACTAATTCCCAACTTTTCAACTAATtctaaactcctcaactcatccccaactcctcaactcatccccaactccccaactcatcccgaCTCCTCAACTAATTTCAAACTCCTCAACTAATTCCCAACTTTTTAACTAATtctaaactcctcaactcacactaaatccccaactcatcccgaCTCCTCAACTAATTTCAAGCTCCTCCACTAATTCCCAACTTTTCAACTAATTCTAAACTCCTCAACTCTTTCCCAACTCCTCAACTAATTCCAAACTCCTCAACTTATCTAAAACTCCTCAACTCTTTCCCAACTCCTCAACAAATTCCTGCAGTTAAAGTGGCAAGGGGGGACCGACTCCACACTAATGCCTATATATTTAGAATAGGACATTGTTGTAAAAGCTCCTGTTGGTGTAATATGTTGGTGCCCAATACTTTTCTTCATATAGCTCCAATTCAAAACAACCATCaccttaaaatgaaaatgtctCACTGGCTTATGTAGTCAGCATTTTGTGATAGAGGGGTGAGGTGTGATAGATTAGAGCTGGTGGTAAAtcgtattgtttttattaaggtCATTAATTTAAGCTCCAGTGGGCCGCAGGTGCAGAGTGTGCTGTGCTGGTCTGGGCTGTGGTCTCAGGTAGGGCTGAGACACTGATGCAGCGGATTAGCCGAGCTGAGGAAGGTCAGGAAGGACGGATGAGTGAGGAAGATCAAGTGATTGAGGTTGTCTGAGATGGATAAGACAGGCCTGTGCTCATCACCCACATTCATAAACACCTCACACTGCGCTGAGAGCCAGTCAGTCGCTCAGTCAGTCAGTCGGTCAGTAGCACACGGCAGCGGACACGCAGAGATGCATCCTCTCATGGTCAGCATCATTTCAGCCAACACCTCCTTAACGGTGATCCTGTGGAACTTCCTGCTGTCCCAGGTCTTCTGCAAGAAGCTACCAGCACCACCCCCATCTGAGGAGCAAGTGCCCGTCTGAACTGGCTTTTTGGACCCaacctggaggaggaggaggtggtggtggtggtggaggcgGAGTCGCTGGAGTCTTCTGGAGGGGAGGAGAGAGCTGGAGAAAGAAGAGTCAGATGGGGGAGGAGAATCAcggaggtggtggaggagaagagaaCAATATTACCAGGGATCAAACTCTCTGTAACATCCTGATGACGGCATTATCCTGACGGTTCTCTATCTGGAACCCTAGAGAGACAACACTTActgcagtggttcccaaccctggtcctggagaaCCCTTGGCTCTGTGCATTTTAGTAGTCTCCTGCTATGAAGTTGAAGGAGGGgcttgttaatgagctgattaacTGGATCAGGTGTgagcactaaaatgtgcagggctaGGGGGATGTACTGGACCAGGACAGGGATGAGAGTTGGGAACCACTGTCCACCTAGAGCTCCTTCAAGACCTTACTgactgtgtgttgtgttgtagtgTAATGTACATTAGTATATTGCTCTAATATACTCTATACTGCACACTACTctatagagtagtatagtaTCCAGTATATGTATAATCCCATTTATTACATTTGTCTATTGCTCATATACAGAGTTAATTAGTCATACCAAGAGAACTCTCATTAGTGTAGAGTGGGGAACCTGCTGGACTAGGGAATCAAACCCTTGTTTGGCACCGAAAGGGCAGtagtgttatccactacactaCACCGACCTTCCATGGTTATCTCCACATTCTTATTGGCTTACTtgttattaagtattattaagTTATTTGATGAAATTAAACCCATATTGCTGAATATTACTGCTTAGTTAAGGTACATAAAGGTCAGTTATGGCAATACAAAGTGTACTTTGAATAAAATTGGCCCTAAAATCCTCAAAACTggtaaaaactgttaaaaactggaattttaaacctttaaaagtgcaaaaaaataaacgtGTTTCAAGATGCTCAAAGATGGCAAAacactattatattataaagaCTGCATATTACCATGagtgttttgttgtttaattcaaTATTTAACAACGTATGATGTccataagttttgggatttgggggttTTAGacccctctctggtgagaattgGTAATTGCATCAAGCATGcgtaagaatcattttaaactgggcgggtgtgatgcagtCGTCTTTTAaagtggatgaatccgattccaggttatgttcagtcaaagacTCCAATCTGatattaatcctggttttagcGCAGACTCTATCGTATTCCTTTTTGGCTTCAGAGTTTCTTTacttcttcatttctttggttttactctGAGTGAATGAGATACTGAgcttccccttctgaagtctccattgctccaccagacactcgcgttcagtaaaactgagccggatccgctcttagaggctgtacgtgtgatgtAAACGtaaagtacgtaaagacgtgtgacgtggccagaagacgaagaactcccgcgaaaagtgacccgacaccccagtttttagaattaatataatatactacatCTAGCCCATGTTCCACCTGTGTTATCCCCATCATTTACACCAAACCCACCAGCTTATCTTCTGCTTCTAAGCAGCATCAGAGCAAAGAATAGTCTACTGTCCAACAGCCTgtggagtgtttttttaatttttttgtttgtttgttttggtagTCCCTTTTACGTATATTTCCTCTTTATGTTCTTCCTTTTATATGTACCTATCTGACTAGTGAGATTATTGTGTGGTGTCGATTAATTTATCAGTATTGTATCCTTTTACATACACTACTGGTCAAacgtttttaacatttaatacgtttttaacatttaataaccTGAAATGACCTAAAAATATACTAATTTAAGCATGCAACTTTAAGAGGTTTTGAGCTGAAAGTGGACCGGCAGTAAGAATGGCATTGTTTGTAAAACTATTTGGGGTGTTCTAAAACGTATGACCGGTACTGTGACGTGTGTTTCCAAAATTAGTGTTCGATTTTTCCTGTGGTATTGTGATGCTAAAGTGATTCCCTGTATAAAAAATACCTAATCTAGAAACCAGTCTTGTTATTTTCTATGTTCTGATTCTGTTCTCTGTGGTCTCAtctttattctgaattattctgAATGCCGACCTCAACCATTAGCTAGCACAAGACATGGCTTAATTTGCTaggccatttgtgctctctcagggctctggcagctgatggcgagctgcatgaccaggattcgaaccagtgatctcctgattatagtggcagcgcccaagtctgctggaccactcagatcCCCTGTTCTATTTACGATTTTATTGTCCAGCTATATTACTTTTACAATATAATCATGCTTTTCTGATTAAATTATGTAATCGATAAAGTTTACACACCCTCTGGATAAAAAGCTGCAGAGGCCTTTTTATTATGAGTCTATAAAGCTATAAAACAAC

Function

GO:

id name namespace
GO:0004059 aralkylamine N-acetyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69926 True 3914 lncRNA 0.42 4 13312031 13322430

Neighbor

gene id symbol gene type direction distance location
LOC103040738 adamts10,LOC107676806,LOC107731268,LOC107585873,LOC106613844 coding downstream 466585 12765442 ~ 12845446 (-)
LOC103044727 myo1f,LOC108413823,LOC108264988,LOC107750961,LOC108238367 coding downstream 565951 12698781 ~ 12746080 (-)
acer1 acer1,LOC107585930,LOC107731201,LOC107676796 coding downstream 617166 12679475 ~ 12694865 (-)
LOC103045339 mllt1a,mllt1 coding downstream 635132 12652988 ~ 12676899 (-)
rfx2 rfx2,LOC106584375 coding downstream 709030 12544875 ~ 12603001 (-)
dohh dohh,LOC107745802,LOC107548993,LOC106584359 coding upstream 4237 13326667 ~ 13333011 (-)
haus5 haus5 coding upstream 24809 13347239 ~ 13368318 (-)
wdr13 wdr13,LOC107584863,LOC106572373,LOC107552201 coding upstream 47467 13369897 ~ 13390106 (-)
LOC103033264 NA coding upstream 122956 13445386 ~ 13457273 (-)
LOC103033893 NA coding upstream 138034 13460464 ~ 13467261 (-)
LOC111192612 NA non-coding downstream 217197 13078332 ~ 13094834 (-)
LOC111192613 NA non-coding downstream 236691 13045536 ~ 13075340 (-)
G51841 NA non-coding downstream 280476 12835689 ~ 13031555 (-)
G51912 fzr1,fzr1a,LOC105895242 non-coding upstream 17994 13340424 ~ 13343218 (-)
G51916 NA non-coding upstream 40218 13362648 ~ 13364675 (-)
G51919 NA non-coding upstream 42386 13364816 ~ 13366835 (-)
G51842 NA non-coding upstream 44995 13367425 ~ 13402243 (-)
G51932 NA non-coding upstream 111471 13433901 ~ 13434545 (-)
LOC103042573 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167 other downstream 1430090 11831802 ~ 11881941 (-)
G51346 NA other downstream 2107608 11204054 ~ 11204423 (-)
G51187 kansl3,LOC107678435 other downstream 2995564 10313482 ~ 10316467 (-)
LOC103023850 NA other downstream 3014583 10294056 ~ 10297448 (-)
LOC103022194 LOC103022194 other downstream 3025088 10282487 ~ 10286943 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other upstream 243568 13565998 ~ 13592947 (-)
G51960 glis1 other upstream 340971 13663401 ~ 13664114 (-)
G52161 NA other upstream 1086506 14408936 ~ 14411611 (-)
G52299 NA other upstream 1753866 15076296 ~ 15084568 (-)
LOC103028883 LOC108430093 other upstream 2839210 16161640 ~ 16219847 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G45437 NA non-coding CM030125.1 CM030125.1 36867304 ~ 36870685 (-)