LOC111192619 (LOC108442363)


Basic Information

Item Value
gene id LOC111192619
gene name LOC108442363
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 14038340 ~ 14063185 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU70196
tgctggcgcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacggaatccagggtaatgtcagcatgtcaccaccaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaacaaccAGGAGTTTGTGTGTGCAGCTTAAAATGAACTAATATAACCTAACAAACATCTAATTTTACATAAGTAACTAATCACAACTGTTGTTGTCACCATATATAAGTGGCTAATTGTggtgtaaatgtgtattttttgtaaataggACACCGCAGAAATCCGAGCAGACAGAGCATTGCAGTGGCTCCGTGCAGATATGCTATATTCCATATGGGCTTACAAGTGGCTAAAAAGGCTGGAAATAAAGTGGATTATCTATACTATTATCTTGTCAGTCCAATTTAAACACCGGCATCACGGTTCCTCTGTACCCCTGCAGCTGCACCCTCCCTCAGAGATGAAATAAAAGAGGTCCTGCTGGAGGAACAACCCAGGATTATGTTTGCATCATCAGCTGATCTCAAAGCAGCTTACCTATTGGCCTGCTGTTGTCCAGTTTGGGCAGGCGTGTGGCCCTTTCACGAGAGGAAAGCTTCACGTGTTGTCCCGAGGAGTAGAGCGAGACCCGGCGGGCCACCGGTCTGTCCCGCTGCTCGTCCCCCAGCACCTGCACCAGGAGGTCCAGCAGCGTCCTCCTGTCCTTCTGCTTGGCTTCACTGCTGTCCATACACTGGCTGGAGGTGACGAGCAAAACCATCATACTCAACAATATGTGCCATCTCTTCTCAGCCGGCATGGCTTTATTCAGcctgataaacaaacaaacacaaacatccCATCAACATTCACTTTACACCCAGAAACATCAACACAATGTTCACTTAATGCTTTATTGTTGCTTTAGAACAACATAATCTAAATGTTATACTTTTGCTTCAGCATAATGTTCACTAAATGCTTTATTGTTACTTTAGAACAACATTATCTAAATGTTATACTG
>XR_002650034.1
AGCTCCATTTAACCTTTATCCACCAACGTACACCGAAGTGGAGGTTAGAGGTTAGCTCTAAAGCTAACATCTTCTCAGTGAGACTCAAAGCATCTGACCTGCCTGCTTTACCGGAACTTCAGAACCAGACCTTTACAGACTGCTGTTCAAAGAAGAGGGGATGCTACACAATGGCAAAAATTGGCCCCACCCCTATTGTGACGCTGGCAGCACAGATGTCTtttggctgatgtatcaaagCTGGGGATCCGGCTCTTTCCTCTACGTGCGCTGgACACCGCAGAAATCCGAGCAGACAGAGCATTGCAGTGGCTCCGTGCAGATATGCTATATTCCATATGGGCTTACAAGTGGCTAAAAAGGCTGGAAATAAAGTGGATTATCTATACTATTATCTTGTCAGTCCAATTTAAACACCGGCATCACGGTTCCTCTGTACCCCTGCAGCTGCACCCTCCCTCAGAGATGAAATAAAAGAGGTCCTGCTGGAGGAACAACCCAGGATTATGTTTGCATCATCAGCTGATCTCAAAGCAGCTTACCTATTGG
>XR_002650035.1
AGCTCCATTTAACCTTTATCCACCAACGTACACCGAAGTGGAGGTTAGAGGTTAGCTCTAAAGCTAACATCTTCTCAGTGAGACTCAAAGCATCTGACCTGCCTGCTTTACCGGAACTTCAGAACCAGGTTACCCTCCACTGAATGTTAAAAGCAAAATCGTTTGGACGTTTggACCTTTACAGACTGCTGTTCAAAGAAGAGGGGATGCTACACAATGGCAAAAATTGGCCCCACCCCTATTGTGACGCTGGCAGCACAGATGTCTtttggctgatgtatcaaagCTGGGGATCCGGCTCTTTCCTCTACGTGCGCTGgACACCGCAGAAATCCGAGCAGACAGAGCATTGCAGTGGCTCCGTGCAGATATGCTATATTCCATATGGGCTTACAAGTGGCTAAAAAGGCTGGAAATAAAGTGGATTATCTATACTATTATCTTGTCAGTCCAATTTAAACACCGGCATCACGGTTCCTCTGTACCCCTGCAGCTGCACCCTCCCTCAGAGATGAAATAAAAGAGGTCCTGCTGGAGGAACAACCCAGGATTATGTTTGCATCATCAGCTGATCTCAAAGCAGCTTACCTATTGG

Function

NR:

description
PREDICTED: protein FAM150-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70196 True 1067 lncRNA 0.45 2 14038340 14040281
XR_002650034.1 False 549 lncRNA 0.47 3 14039674 14063185
XR_002650035.1 False 595 lncRNA 0.47 3 14039674 14063185

Neighbor

gene id symbol gene type direction distance location
LOC103023638 LOC108442362 coding downstream 7233 14015464 ~ 14031107 (-)
LOC111192617 NA coding downstream 30583 14000804 ~ 14007757 (-)
LOC103027544 LOC108442360 coding downstream 42981 13913721 ~ 13995359 (-)
dmap1 dmap1,LOC107750524,LOC107758267,LOC107585836,LOC107699933,LOC107548533 coding downstream 127049 13902215 ~ 13911291 (-)
LOC103027869 LOC108442365 coding downstream 184069 13790533 ~ 13854271 (-)
mindy4 NA coding upstream 13579 14076764 ~ 14092865 (-)
nexn nexn coding upstream 32148 14095333 ~ 14121329 (-)
tmem47 tmem47 coding upstream 103484 14166669 ~ 14187067 (-)
cpox cpox,LOC102782768 coding upstream 148405 14211590 ~ 14221513 (-)
LOC103033235 NA coding upstream 191883 14255068 ~ 14276663 (-)
G52024 NA non-coding downstream 24332 14012373 ~ 14014008 (-)
G51992 NA non-coding downstream 152781 13879399 ~ 13885559 (-)
G51958 NA non-coding downstream 398221 13639888 ~ 13640119 (-)
G51941 NA non-coding downstream 548141 13487919 ~ 13490199 (-)
G51932 NA non-coding downstream 603795 13433901 ~ 13434545 (-)
G52064 NA non-coding upstream 35826 14099011 ~ 14100478 (-)
G52127 NA non-coding upstream 96591 14159776 ~ 14160951 (-)
G52132 NA non-coding upstream 138981 14202166 ~ 14215562 (-)
G52131 NA non-coding upstream 141933 14205118 ~ 14215862 (-)
G52130 NA non-coding upstream 188252 14251437 ~ 14253428 (-)
G51960 glis1 other downstream 374226 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 445393 13565998 ~ 13592947 (-)
smim24 NA other downstream 714657 13285303 ~ 13323683 (-)
LOC103042573 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167 other downstream 2156399 11831802 ~ 11881941 (-)
G51346 NA other downstream 2833917 11204054 ~ 11204423 (-)
G52161 NA other upstream 345751 14408936 ~ 14411611 (-)
G52299 NA other upstream 1013111 15076296 ~ 15084568 (-)
LOC103028883 LOC108430093 other upstream 2098455 16161640 ~ 16219847 (-)
G52493 NA other upstream 2119550 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 2163051 16226236 ~ 16227174 (-)

Expression


Co-expression Network