G52127


Basic Information

Item Value
gene id G52127
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 14159776 ~ 14160951 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU70327
AACTCCTTTATTAAGTACAGCAACTTGAGGCATTTGCACAGGAAATCAACACCTTAACACAGAATACAGTGTGGCATAATATGCATAAAAGTACCAGGTAGGATATAATTCATATGCATGTCTCTTAGTGTTCTTGATTCAAAAGAGGAGCTCTCGGAGAGCGgatacagtgtgaagTCTACATTAAGATTAATCGAACCCCTGCTTCCAATCATTACATCGTCCCATGATCTGGTGGAAGTGCAGCCATGCGCGTGCGGTCAGCTCGGGCTCGGTTTCCTGTAAACATGGCCTTATCGTTCTGGTTGGAATGGTAGCTCGGTGCGGCACGCCTACCTGGCGCCGTCCTAGAGGCTCCTCCTCCCACTTCCTAAAAACCcgaaaattaattaatgaatccTCAGATCCATTCTCGTTCTGCTCCACAGCCGACCGGTCCCTTCGGTCTGCTGGTCTGGAGATCGAGGCTCCCTCCGTCCCTCTTTTAAAGCGTCGTTTTTCagtaggaaacaaaaaaaaaaacaaaaaaaaaaaaacattaaaacaagtgCATGGGCCTTCTTGAGGGGCTGGAGGGGGCGGAGCTTGATTGGACACACAGATTTAAGGTTAATTAAGGGGTGTGGCTCTTCCTCAGCAGGGCAGGATCGGGCTCAGTTATTGCTGGTTGGGGCTAAAAGGGGAAACACAGGCAGAGCCCAGAAGtggtatgatgatgatgaatcaGAGATCAGAAGAGAAGGCGGGGTTTGTGTGAAGCTTGGGGGCGGGGTGCAGGCGGGGTTTCAGGTGTAGCGGGGCATCTCGCACTGCTCACAGCGGTTCAGAGCCGGGTGATTGAGGAAAGTGCAGCTGTCACAGTTCCACTGAGCGCCCTCGAAGTCCTCGTCCCGCTGCGGCTCCACCGAAGGCTTCACATTCCGCCCTCCTCCAtctaaaaacacacatcaaaacacacacaatccacATACTGATCCGAAATTATTAAATGGAGCACAGAGTGGACAGACGGCTTCTCCAAATGTCCTGTAAAGTTTACTTTTACAGAATTTTACTGTAAAGAAAgtggttttgtatcacctacactcGTGGTCAATATTTGGGTCAAGGCCTGATAGTTATTCTAAACATTTCAAAACTTATGGTCATTT

Function

NR:

description
PREDICTED: lens fiber major intrinsic protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70327 True 1151 lncRNA 0.48 2 14159776 14160951

Neighbor

gene id symbol gene type direction distance location
nexn nexn coding downstream 38447 14095333 ~ 14121329 (-)
mindy4 NA coding downstream 66911 14076764 ~ 14092865 (-)
LOC103023638 LOC108442362 coding downstream 128669 14015464 ~ 14031107 (-)
LOC111192617 NA coding downstream 152019 14000804 ~ 14007757 (-)
LOC103027544 LOC108442360 coding downstream 164417 13913721 ~ 13995359 (-)
tmem47 tmem47 coding upstream 5718 14166669 ~ 14187067 (-)
cpox cpox,LOC102782768 coding upstream 50639 14211590 ~ 14221513 (-)
LOC103033235 NA coding upstream 94117 14255068 ~ 14276663 (-)
sh3gl1 sh3gl1,sh3gl1b,LOC107700047,LOC107717567,LOC108265290 coding upstream 140192 14301143 ~ 14349004 (-)
LOC103032914 LOC108444319,LOC107657922,LOC107717565,LOC107585851,LOC107750669,LOC107548667 coding upstream 194207 14355158 ~ 14388059 (-)
G52064 NA non-coding downstream 59298 14099011 ~ 14100478 (-)
LOC111192619 LOC108442363 non-coding downstream 96591 14038340 ~ 14063185 (-)
G52024 NA non-coding downstream 145768 14012373 ~ 14014008 (-)
G51992 NA non-coding downstream 274217 13879399 ~ 13885559 (-)
G51958 NA non-coding downstream 519657 13639888 ~ 13640119 (-)
G52132 NA non-coding upstream 41215 14202166 ~ 14215562 (-)
G52131 NA non-coding upstream 44167 14205118 ~ 14215862 (-)
G52130 NA non-coding upstream 90486 14251437 ~ 14253428 (-)
G52123 NA non-coding upstream 145258 14306209 ~ 14339280 (-)
G52194 rap1aa,LOC107594522,LOC101074250,LOC107679791,LOC107556321,LOC107751450,LOC107090729,LOC106952760 non-coding upstream 300985 14461936 ~ 14490015 (-)
G51960 glis1 other downstream 495662 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 566829 13565998 ~ 13592947 (-)
smim24 NA other downstream 836093 13285303 ~ 13323683 (-)
LOC103042573 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167 other downstream 2277835 11831802 ~ 11881941 (-)
G51346 NA other downstream 2955353 11204054 ~ 11204423 (-)
G52161 NA other upstream 247985 14408936 ~ 14411611 (-)
G52299 NA other upstream 915345 15076296 ~ 15084568 (-)
LOC103028883 LOC108430093 other upstream 2000689 16161640 ~ 16219847 (-)
G52493 NA other upstream 2021784 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 2065285 16226236 ~ 16227174 (-)

Expression


Co-expression Network