G52230


Basic Information

Item Value
gene id G52230
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 14743553 ~ 14749494 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU70450
tatagaacaaaacaacaatgttcattttactcaaacataaacctataaatagcaaaatcagagaaacattttgatcattttaaagtgacTGTATTATaggaactgctgctttaaaggcaTTGTAGGTATTCAGAATATGTGAATATGTCTAGGTGTGTGCatgaaatgtgctttatttgtcttcttctttttcccatTATTCTCATTCacatcctcttcctcttcctctcacccatatctctctctcttcctgtctgtctgtctcgctCTGTCTTCCTGAGCATGTCTTAATGAATGAGGTCACCAGCCATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70450 True 312 lncRNA 0.36 2 14743553 14749494

Neighbor

gene id symbol gene type direction distance location
LOC107197797 NA coding downstream 218287 14506734 ~ 14525266 (-)
LOC103032914 LOC108444319,LOC107657922,LOC107717565,LOC107585851,LOC107750669,LOC107548667 coding downstream 355494 14355158 ~ 14388059 (-)
sh3gl1 sh3gl1,sh3gl1b,LOC107700047,LOC107717567,LOC108265290 coding downstream 394549 14301143 ~ 14349004 (-)
LOC103033235 NA coding downstream 466890 14255068 ~ 14276663 (-)
cpox cpox,LOC102782768 coding downstream 522040 14211590 ~ 14221513 (-)
LOC103046390 LOC108414874,LOC108265648,LOC107679757,LOC107711941,LOC107717540,LOC107591757 coding upstream 360778 15110272 ~ 15128265 (-)
LOC103031338 rhoc,LOC108427591,LOC105908082,LOC107729745,LOC103035456,LOC108271788,LOC107668165,LOC105902219 coding upstream 545506 15295000 ~ 15355710 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding upstream 1169976 15919470 ~ 15973008 (-)
LOC103030780 LOC108430129 coding upstream 1231139 15980633 ~ 16035096 (-)
neurl4 neurl4 coding upstream 1336672 16086166 ~ 16129376 (-)
G52227 NA non-coding downstream 78725 14664272 ~ 14664828 (-)
G52217 NA non-coding downstream 176939 14521355 ~ 14566614 (-)
G52215 NA non-coding downstream 182518 14554943 ~ 14561035 (-)
G52218 NA non-coding downstream 214974 14527219 ~ 14528579 (-)
G52194 rap1aa,LOC107594522,LOC101074250,LOC107679791,LOC107556321,LOC107751450,LOC107090729,LOC106952760 non-coding downstream 253538 14461936 ~ 14490015 (-)
G52233 NA non-coding upstream 35917 14785411 ~ 14815750 (-)
G52235 NA non-coding upstream 71418 14820912 ~ 14821111 (-)
G52250 NA non-coding upstream 168909 14918403 ~ 14918852 (-)
G52252 NA non-coding upstream 173801 14923295 ~ 14924378 (-)
G52271 NA non-coding upstream 289824 15039318 ~ 15039561 (-)
G52161 NA other downstream 331942 14408936 ~ 14411611 (-)
G51960 glis1 other downstream 1079439 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 1150606 13565998 ~ 13592947 (-)
smim24 NA other downstream 1419870 13285303 ~ 13323683 (-)
LOC103042573 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167 other downstream 2861612 11831802 ~ 11881941 (-)
G52299 NA other upstream 326802 15076296 ~ 15084568 (-)
LOC103028883 LOC108430093 other upstream 1412146 16161640 ~ 16219847 (-)
G52493 NA other upstream 1433241 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 1476742 16226236 ~ 16227174 (-)
LOC111192725 NA other upstream 1594262 16343756 ~ 16356960 (-)

Expression


Co-expression Network