G52540 (LOC107584402,LOC108430072,LOC107733451,LOC107657288,LOC107738984,LOC107556576)


Basic Information

Item Value
gene id G52540
gene name LOC107584402,LOC108430072,LOC107733451,LOC107657288,LOC107738984,LOC107556576
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16285052 ~ 16293072 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU70853
gagcgtttgtttttctgggattaaaagtgtgaattcagctgtaactggaaatatccgCGCCGAagaactgtgctggactgaggtgcacagctttccacacgtgctcatgtttacaagcacgtggcCATCCATGCAGTTACCTCGTGTTAATCCTGCCCCTCCCCTtcacacttctcaggcagcagcagcctgtcactcacacagacacagagacagcgatgtgtatctacttcttgtgtcaagaatcaaaacattacaacacaccgcgtttgatttaattgccttaagtgacatcacaggCCCTGTGATGTGAATAATACACGTGTGCACATCGccatgacgatgcttaaacgatatatcatgCCTCCataacctgcacccactatcagacctctctccacctcactcacatgatatcacctcacaacttatacgcACCTCTCCCAGGTCGAGGATGAAGCAGTCTCCCTTGTTGAAGCTGTCCCAGCTCAGCTCCACCTCTTTCGCTCTGATGTTCTTCTTCCCTTTGATGTGATACAACCTTTGAACCGGACCAGAACCGGACTGAGATCTCCTGAACCCAGACTCCACTCCACCCtcCTTATAGCTGATTCCTCTGGGGAAGAGGTTCATGAACTCGGGCGACTCGTAGCCCTGCACCTGCCTGTGCTGGACTGGCTCTCCACCCAGGAAATTATCCAGCTGGGTGGCAAGCATGGCACACGCAACCTGCTCATCACGAGACGACTTCTCTCCTAAAACATACAGAGAAGAACAGCGATAAATGGGGGGTTGCGTGATTTTTTGAGCCAATTTTGCTTTTCATGGTCTGTAAACATGATTTAAACTCTACAGCTCTCTTAAAATGACCATTCTTTTGGTTTCTCTGCTCCCTGTCCACTTCTGCTTCCttttttttagctctgtttAATCCCCTTTACAC

Function

NR:

description
PREDICTED: macrophage-capping protein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70853 True 943 lncRNA 0.48 2 16285052 16293072

Neighbor

gene id symbol gene type direction distance location
shbg NA coding downstream 125336 16140670 ~ 16159716 (-)
neurl4 neurl4 coding downstream 155676 16086166 ~ 16129376 (-)
LOC103030780 LOC108430129 coding downstream 249956 15980633 ~ 16035096 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding downstream 312044 15919470 ~ 15973008 (-)
LOC103031338 rhoc,LOC108427591,LOC105908082,LOC107729745,LOC103035456,LOC108271788,LOC107668165,LOC105902219 coding downstream 929342 15295000 ~ 15355710 (-)
LOC103032046 NA coding upstream 70541 16363613 ~ 16374341 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding upstream 529175 16822247 ~ 16928239 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding upstream 896743 17189815 ~ 17464293 (-)
LOC111192622 NA coding upstream 1174979 17468051 ~ 17476591 (-)
LOC103035515 NA coding upstream 1355379 17648451 ~ 17665261 (-)
G52542 NA non-coding downstream 29574 16255142 ~ 16255478 (-)
G52510 NA non-coding downstream 34818 16250007 ~ 16250234 (-)
G52505 NA non-coding downstream 35719 16226833 ~ 16249333 (-)
G52547 NA non-coding upstream 2938 16296010 ~ 16299701 (-)
G52559 NA non-coding upstream 82075 16375147 ~ 16376685 (-)
G52560 NA non-coding upstream 83927 16376999 ~ 16378858 (-)
G52565 mfsd8 non-coding upstream 105126 16398198 ~ 16402965 (-)
G52654 NA non-coding upstream 302099 16595171 ~ 16651572 (-)
G52503 polr2a other downstream 57878 16226236 ~ 16227174 (-)
LOC103028883 LOC108430093 other downstream 65205 16161640 ~ 16219847 (-)
G52493 NA other downstream 99740 16182735 ~ 16185312 (-)
G52299 NA other downstream 1200484 15076296 ~ 15084568 (-)
G52161 NA other downstream 1873441 14408936 ~ 14411611 (-)
LOC111192725 NA other upstream 50684 16343756 ~ 16356960 (-)
zcchc4 NA other upstream 113647 16406719 ~ 16427613 (-)
G52652 NA other upstream 295078 16588150 ~ 16589783 (-)
G53164 NA other upstream 2293329 18586401 ~ 18667287 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 3229630 19522702 ~ 19570378 (-)

Expression


Co-expression Network