LOC111192725


Basic Information

Item Value
gene id LOC111192725
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16343756 ~ 16356960 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU70869
aagtaaaaaagCTGTATATCTCTATAATAATGTCGTTTTTCTATCTCTGGTAGACTCCAGATGTCAGCTTTGCCCGGAGCGATGGCTCTGGTTCTGGGGGCACTGCTACTTCTTCTCTGCAGGCCTGGAGAAAAACCGGCGGTGGGCGGAGAGCGAGGAGTTCTGCCGAGAGCACAACGCCAGCCTGGCCATCATTCAGGACGTCACTGAGATGGTACGAATAGACTGATGGATGAATGAGTCTTGGTCTCGCCCATTGACAGTATATA
>XM_022670951.1
TTGTTTTTTACAGCTGCAGCAGAACGTGTCACCTTTTCACCCTTCCTGAAAAAAAGGGGTGTTACTGTTGAAACTGTTAGACGAAGGAGAATTCTGGGTAGAGAGTTTCTATTGCTGATCCTAAACCAGAGAAAATGCAGCTGCAGTTGGTTTCAGCAGAGCTCAGACATGGAGTCGTCTCAGATCGGCTTGGAGAATATCAACATCACCGGAAATAAAGCAGGAAGACAAACTAAAGCGGGTAAAGTCCCTGGTGGAGTTTGGATACGCCTGGCTCTTCTCTTTTGCATCGTTTTACTGGCCAAGGGACTTTTGATCACATGTGCAACCTTCCtattaAGTTTGGATCTGCCTCACTGCCTGCAGAGTAACAGAACCTGTGagaagactgagagagagatattacTGCTCCGTGTGAAGAAGCTCACAGCACTGCTTCACAGTGTCACTAAAGACTCCAGATGTCAGCTTTGCCCGGAGCGATGGCTCTGGTTCTGGGGGCACTGCTACTTCTTCTCTGCAGGCCTGGAGAAAAACCGGCGGTGGGCGGAGAGCGAGGAGTTCTGCCGAGAGCACAACGCCAGCCTGGCCATCATTCAGGACGTCACTGAGATGGAGTTTATTGTTGAACATATGAGGACCTATCAGGAGATGCCGTTTCTCTGGCTCGGTCTAACATACTCTCAGGAAGAGGACATGTGGATTTGGCAGGACGGAACACctttacacaattacacatttATAAATATGCAGTGGGACTCAGGGCAGTGGGACTGTGCAGATCTGCGGGGGGACGGAAGTGTGTTTGCGGGTGACTGTAAGGTGTACGGCCCCTGGCTGTGTGAGAAACCCGTGGACCCTGACGAGATACCATCACCCACCAGCATCAACATCCCTGAATAAAGCAGATCTACAGTCCTCACTGCAGAGACACACCCTGCCTTTACAGTCAGAACTCCGGGGCTGCTGGGTAACGAGCAGCTTCTCACACTGGAAGCGAAACCTCGCGCTCTCTCGGGACTAAAACCTGTGCAGAACTCGCCCCCGACTCCAATCCTGAGAGTCTCTATAAACAACTGATTCAGCATTGAGATAAACCGAGCTAAACCACATCACAGGGGGGTTTCTCAATACCAAAAACGAGAAAAATGCAcctaccctggtgaaaaaaatatatatacttaattgtacttaaaacatagaaaaatgtctaagtatgctgtaaatatac

Function

GO: NA

KEGG:

id description
K17517 CLEC12B; C-type lectin domain family 12 member B

RNA

RNA id representative length rna type GC content exon number start site end site
TU70869 False 269 lncRNA 0.50 2 16343756 16353965
XM_022670951.1 True 1231 mRNA 0.48 6 16350939 16356960

Neighbor

gene id symbol gene type direction distance location
shbg NA coding downstream 184040 16140670 ~ 16159716 (-)
neurl4 neurl4 coding downstream 214380 16086166 ~ 16129376 (-)
LOC103030780 LOC108430129 coding downstream 308660 15980633 ~ 16035096 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding downstream 370748 15919470 ~ 15973008 (-)
LOC103031338 rhoc,LOC108427591,LOC105908082,LOC107729745,LOC103035456,LOC108271788,LOC107668165,LOC105902219 coding downstream 988046 15295000 ~ 15355710 (-)
LOC103032046 NA coding upstream 6653 16363613 ~ 16374341 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding upstream 465287 16822247 ~ 16928239 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding upstream 832855 17189815 ~ 17464293 (-)
LOC111192622 NA coding upstream 1111091 17468051 ~ 17476591 (-)
LOC103035515 NA coding upstream 1291491 17648451 ~ 17665261 (-)
G52538 NA non-coding downstream 3789 16292416 ~ 16339967 (-)
G52547 NA non-coding downstream 44055 16296010 ~ 16299701 (-)
G52540 LOC107584402,LOC108430072,LOC107733451,LOC107657288,LOC107738984,LOC107556576 non-coding downstream 50684 16285052 ~ 16293072 (-)
G52543 NA non-coding downstream 54211 16261118 ~ 16289545 (-)
G52542 NA non-coding downstream 88278 16255142 ~ 16255478 (-)
G52559 NA non-coding upstream 18187 16375147 ~ 16376685 (-)
G52560 NA non-coding upstream 20039 16376999 ~ 16378858 (-)
G52565 mfsd8 non-coding upstream 41238 16398198 ~ 16402965 (-)
G52654 NA non-coding upstream 238211 16595171 ~ 16651572 (-)
G52655 NA non-coding upstream 265789 16622749 ~ 16677399 (-)
G52503 polr2a other downstream 116582 16226236 ~ 16227174 (-)
LOC103028883 LOC108430093 other downstream 123909 16161640 ~ 16219847 (-)
G52493 NA other downstream 158444 16182735 ~ 16185312 (-)
G52299 NA other downstream 1259188 15076296 ~ 15084568 (-)
G52161 NA other downstream 1932145 14408936 ~ 14411611 (-)
zcchc4 NA other upstream 49759 16406719 ~ 16427613 (-)
G52652 NA other upstream 231190 16588150 ~ 16589783 (-)
G53164 NA other upstream 2229441 18586401 ~ 18667287 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 3165742 19522702 ~ 19570378 (-)
G53382 NA other upstream 3492990 19849950 ~ 19850350 (-)

Expression


Co-expression Network