G52565 (mfsd8)


Basic Information

Item Value
gene id G52565
gene name mfsd8
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16398198 ~ 16402965 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU70885
GTTTGGGTCCGAGTATCTTTGAGTACAGGGTGTAGGACATGACGTTACACGCAGGATAGCCCACTCCTATAAGAATATCAGACGTGATGTACTGAGCCAACTGGATGGCGGGGGTATACTGGCACCAGATCTGTTCAGGAGGGCATCCGGTGGGTTCCACAGTGccattagcagcattagcagcaaaAGTAATAGCTGGTATGGAGTTATTCTGAAGATCTGCCCACTGAATCTTCGGGTACTGGTTTCCCCAGGGTAACAGGATAAAGAAGCCAATAAACACTATGGCTAATCCACTCAAAAGCACTGGACGATCACCAAtcCGTACAGAAATCACTTTCACCACAAGGAACACTATGATGGATTCAAATCCGATGGCTGCCAGTATGATCCCGTTATACAACACGGCTTCTTTCCTCGTCCACGCAAACATGTCCATCGACAAGGGGGTGGAG

Function

symbol description
mfsd8 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in lysosomal membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 7. Orthologous to human MFSD8 (major facilitator superfamily domain containing 8).

NR:

description
PREDICTED: major facilitator superfamily domain-containing protein 8 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70885 True 455 lncRNA 0.48 3 16398198 16402965

Neighbor

gene id symbol gene type direction distance location
LOC103032046 NA coding downstream 23857 16363613 ~ 16374341 (-)
shbg NA coding downstream 238482 16140670 ~ 16159716 (-)
neurl4 neurl4 coding downstream 268822 16086166 ~ 16129376 (-)
LOC103030780 LOC108430129 coding downstream 363102 15980633 ~ 16035096 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding downstream 425190 15919470 ~ 15973008 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding upstream 419282 16822247 ~ 16928239 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding upstream 786850 17189815 ~ 17464293 (-)
LOC111192622 NA coding upstream 1065086 17468051 ~ 17476591 (-)
LOC103035515 NA coding upstream 1245486 17648451 ~ 17665261 (-)
LOC103035822 NA coding upstream 1265699 17668664 ~ 17669725 (-)
G52560 NA non-coding downstream 19340 16376999 ~ 16378858 (-)
G52559 NA non-coding downstream 21513 16375147 ~ 16376685 (-)
G52538 NA non-coding downstream 58231 16292416 ~ 16339967 (-)
G52547 NA non-coding downstream 98497 16296010 ~ 16299701 (-)
G52540 LOC107584402,LOC108430072,LOC107733451,LOC107657288,LOC107738984,LOC107556576 non-coding downstream 105126 16285052 ~ 16293072 (-)
G52654 NA non-coding upstream 192206 16595171 ~ 16651572 (-)
G52655 NA non-coding upstream 219784 16622749 ~ 16677399 (-)
G52662 NA non-coding upstream 275122 16678087 ~ 16765190 (-)
G52673 NA non-coding upstream 349536 16752501 ~ 16753583 (-)
G52676 NA non-coding upstream 356253 16759218 ~ 16760425 (-)
LOC111192725 NA other downstream 41238 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 171024 16226236 ~ 16227174 (-)
LOC103028883 LOC108430093 other downstream 178351 16161640 ~ 16219847 (-)
G52493 NA other downstream 212886 16182735 ~ 16185312 (-)
G52299 NA other downstream 1313630 15076296 ~ 15084568 (-)
zcchc4 NA other upstream 3754 16406719 ~ 16427613 (-)
G52652 NA other upstream 185185 16588150 ~ 16589783 (-)
G53164 NA other upstream 2183436 18586401 ~ 18667287 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 3119737 19522702 ~ 19570378 (-)
G53382 NA other upstream 3446985 19849950 ~ 19850350 (-)

Expression


Co-expression Network