G53804 (ddit4)


Basic Information

Item Value
gene id G53804
gene name ddit4
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21919225 ~ 21921594 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72536
gaaaaaaaaaaaaaaaaaaaataaaaaggcacaGGACCATTTTAACCGGATCTTCACACAAATAAAATGGCACTtgctaaattaaaaagttaaaaacgaTGTTCCATGACAAGTAAATCAAGTTTACAACACGATACATAGCTGCCACAGCAAGTTTCCGCAGAAACTGAGGTAAACATTTCAAAGCAGTTGACAGAATAGCATCTGTCTTGTTAGAAAACTGCCTGAAAGAAGTGCAATATATGATCTATATGCAGTAATTCACAACTTGTACATACAGCAGTCTTGAAAACAAGGATGTTTATCAATTTGACAAACAGTGTACCCTATATGTTCTTTTGTATAAACACTCTGGTGACAAAGGATatgcagttgtgtgtgtgtttaggtaacTTCTTGACTATTGTAgtacacttcattataaaatacAAGCTTTATTGCCTCAGGCATTCGGTCTTCAGAAGGCAAGGTCATGTCAGTCCTCTGCAACAACAGCTCACAGCTCTTGAATCACCAAAAAGTGATGAGAGGCTTCTCTGAGAATAAGACAGCTGCTGGAGGTCCAGAAAGAGTCAAGttagtctttttttgttttcagcatTCTTCAATAAGCAGCTCTTCAGAGCTATAGAGTTTTCTCTTAATCACCCTGAAGCCAGTGCTCAGTTTAAGGGCATTTCTTACAGGTGGAGACGAGGAGGACTTGGGTGCAAACAGGCCCTGGATTTTAGGCCAAATGCCTCCTGACTCCAGTCTGAGTACAAGTGTGAGCTGAAAGGTGGGGACGAGGTAAGGGTCTGCAGCTATCTGCCCTGCAGACTGAAGTGTGCCAGCCTGCTCCACACACAGGTCGATCAGCGCCCCTCGCAGGCCGCACGGCTCGCTCGCAGCCAGATGTACCAGTTCCTGGCCTATGTGCTCCAGAAGTTTCTCGGGGATAAGCAGCTTGGAGCAGTGGAGAGTACAGTCTTTTGCTTCAATCAGGCTGCGGGAGATGAGCTGCACAACTTCTTTACAGAGGCTCTCTTCCATTGGGTCGTAGAAGTATTCAGAATCGAGGTTGGACAGGTCTGGCAGAGATACAGAacCAGAGTCAGATACATCATCTCTGCTGCTGTTGCTCTCAGAGTCCGAGTCCAGGCTGTGGCTCAGTTTCTGGACCAGAGAGCTCCAGGACAGGCGCTTGGCTGAGGCCTCAGTGGGAGCAGATTCTGTCCAGACCTCAGAACTTCTGTCTTTATGCATGGTTATATCCAGTGAGATGGGAGATACTTCAACAGGAATTagcttctttttctttacttCGAATCAGAGCTGTAACAGTCCAAAGTCGATGCCAGTCCAGTTCTGACGATTAAAGAGCTAGTATTTAAGTGCAAGACACAGTGGTAAAAGTAACAAAGGAGCTGTTTTCTAAGCGCTGATCCCCCTCTACACTCTCCTCCACCGCTCCGTCTCTCTCTACAGA

Function

symbol description
ddit4 Predicted to enable 14-3-3 protein binding activity. Acts upstream of or within dorsal/ventral pattern formation. Predicted to be located in cytoplasm. Is expressed in several structures, including central nervous system; digestive system; mesoderm; muscle; and pleuroperitoneal region. Orthologous to human DDIT4 (DNA damage inducible transcript 4).

NR:

description
DNA damage-inducible transcript 4 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72536 True 1468 TUCP 0.45 3 21919225 21921594

Neighbor

gene id symbol gene type direction distance location
dnajb12 dnajb12 coding upstream 2458 21893409 ~ 21916767 (+)
c6h17orf62 cunh17orf62,c13h17orf62,LOC103021303,LOC107722202,LOC107684063,LOC107565788,LOC107755433 coding upstream 26794 21886548 ~ 21892431 (+)
LOC103045049 mbtd1,LOC103045049,LOC108430745,LOC107684067,LOC107565795,LOC107702488 coding upstream 92061 21809811 ~ 21827164 (+)
tdrkh tdrkh coding upstream 110729 21792556 ~ 21808496 (+)
LOC111192630 NA coding upstream 111662 21806318 ~ 21807563 (+)
ascc1 ascc1 coding downstream 183 21921777 ~ 21949492 (+)
spock2 spock2 coding downstream 45254 21966848 ~ 22037523 (+)
dnai2 dnai2,LOC106610195 coding downstream 147182 22068776 ~ 22078216 (+)
kif19 kif19 coding downstream 164208 22085802 ~ 22154855 (+)
LOC103024857 abca5,LOC108430838,LOC107561411,LOC107684475 coding downstream 235414 22157008 ~ 22200077 (+)
G53785 NA non-coding upstream 80408 21836592 ~ 21838817 (+)
G53744 NA non-coding upstream 312082 21606779 ~ 21607143 (+)
G53742 NA non-coding upstream 316369 21602644 ~ 21602856 (+)
G53737 NA non-coding upstream 456033 21462894 ~ 21463192 (+)
G53732 NA non-coding upstream 500338 21418595 ~ 21418887 (+)
G53801 anapc16,cj104 non-coding downstream 11708 21933302 ~ 21938399 (+)
G53810 NA non-coding downstream 118646 22040240 ~ 22040561 (+)
G53814 NA non-coding downstream 124934 22046528 ~ 22051106 (+)
LOC111192632 NA non-coding downstream 141780 22063374 ~ 22064448 (+)
LOC111192633 NA non-coding downstream 291510 22213104 ~ 22219710 (+)
LOC103028037 LOC108429162,LOC107684133,LOC108273534,LOC108430697,LOC108274369 other upstream 172145 21673574 ~ 21747080 (+)
fbxo11 fbxo11,fbxo11b,LOC108430631,LOC105896971,LOC107728720,LOC107582786,LOC107550041 other upstream 1093551 20794025 ~ 20825674 (+)
cript cript,LOC107582781,LOC107728714 other upstream 1358277 20555314 ~ 20560948 (+)
LOC103044634 LOC108429329,LOC104923123,LOC108273985 other upstream 1455340 20344023 ~ 20463885 (+)
G53426 NA other upstream 1630216 20243150 ~ 20289009 (+)
epc1 epc1,LOC108430856 other downstream 2332593 24254187 ~ 24290765 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other downstream 3170968 25092562 ~ 25108871 (+)
srp19 srp19 other downstream 3624398 25545992 ~ 25549494 (+)
LOC103040153 cdc14b,LOC108265480 other downstream 4615458 26537052 ~ 26551570 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 5041298 26962892 ~ 26973026 (+)

Expression


Co-expression Network