G54093


Basic Information

Item Value
gene id G54093
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 23881979 ~ 23882395 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72916
TTGTTAAAAGGTTAATTAATgtcacaaatatttattaatttgcaccAGTTAAGATATTACTAAATTCTGATGCTTAAGAATATTGTAATGATAATTATGAATGGAtactgtggtaggcccctggggttaggggcgtgaccactgtgacccggaaggaggaagctcacagagatacacagacacggggattaaatgaactcaaaacgtacctttattggcttttaacgccctccaccacacccaaaataaacttaaaacataactcagcccaatggggctctagagtccgtAGAATTACTTAGTTTTTAAGTGTTCATACGAGTCCGCGCAGCCTCAGCCCCCAGCTCCTCAGTGAGAGTTCTCCCAAATGATggcggaggctgagtatatatgcctgtctcaactggcggctcaatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72916 True 417 lncRNA 0.43 1 23881979 23882395

Neighbor

gene id symbol gene type direction distance location
LOC103025909 LOC108429368,LOC107753275,LOC107582197,LOC108273705,LOC107654548 coding upstream 438912 23158042 ~ 23443067 (+)
LOC103025391 LOC108413004,LOC108273491,LOC107655938,LOC107654557,LOC107560959,LOC107753259 coding upstream 1151489 22495776 ~ 22730490 (+)
LOC103024857 abca5,LOC108430838,LOC107561411,LOC107684475 coding upstream 1681902 22157008 ~ 22200077 (+)
kif19 kif19 coding upstream 1727124 22085802 ~ 22154855 (+)
dnai2 dnai2,LOC106610195 coding upstream 1803763 22068776 ~ 22078216 (+)
LOC103038196 LOC108429178 coding downstream 332728 24215123 ~ 24226834 (+)
kif5b kif5b,LOC108430866,LOC107753262 coding downstream 449227 24331622 ~ 24356664 (+)
arhgap12 arhgap12 coding downstream 482449 24364844 ~ 24463165 (+)
znf438 NA coding downstream 758693 24641088 ~ 24715233 (+)
sncaip sncaip,LOC103399731 coding downstream 1414661 25297056 ~ 25304115 (+)
LOC111192638 NA non-coding upstream 157374 23569349 ~ 23724605 (+)
G54063 NA non-coding upstream 248593 23632913 ~ 23633386 (+)
G54050 NA non-coding upstream 318661 23557754 ~ 23563318 (+)
G54049 NA non-coding upstream 319250 23557027 ~ 23562729 (+)
G54046 NA non-coding upstream 344855 23536733 ~ 23537124 (+)
LOC111192728 NA non-coding downstream 77054 23959449 ~ 24048897 (+)
G54120 NA non-coding downstream 263293 24145688 ~ 24145986 (+)
G54130 NA non-coding downstream 428517 24310912 ~ 24359605 (+)
G54139 NA non-coding downstream 595851 24478246 ~ 24478730 (+)
G54141 zeb1,LOC107552760,LOC107666916 non-coding downstream 612030 24494425 ~ 24497418 (+)
G53804 ddit4 other upstream 1960385 21919225 ~ 21921594 (+)
LOC103028037 LOC108429162,LOC107684133,LOC108273534,LOC108430697,LOC108274369 other upstream 2134899 21673574 ~ 21747080 (+)
fbxo11 fbxo11,fbxo11b,LOC108430631,LOC105896971,LOC107728720,LOC107582786,LOC107550041 other upstream 3056305 20794025 ~ 20825674 (+)
cript cript,LOC107582781,LOC107728714 other upstream 3321031 20555314 ~ 20560948 (+)
LOC103044634 LOC108429329,LOC104923123,LOC108273985 other upstream 3418094 20344023 ~ 20463885 (+)
epc1 epc1,LOC108430856 other downstream 371792 24254187 ~ 24290765 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other downstream 1210167 25092562 ~ 25108871 (+)
srp19 srp19 other downstream 1663597 25545992 ~ 25549494 (+)
LOC103040153 cdc14b,LOC108265480 other downstream 2654657 26537052 ~ 26551570 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 3080497 26962892 ~ 26973026 (+)

Expression


Co-expression Network