srp19 (srp19)


Basic Information

Item Value
gene id srp19
gene name srp19
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25545992 ~ 25549494 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73348
CCGCTGTGTTTCTGCCTCCTGAACAGCAGGGGCGATGTGGTACTGACCCGGTAAGTTTACACGGAGAAGAGCGTGTAGCTGTCTGAGCCGCTGCCTGACTACAATGTGAGCACTGCTTTAAACCGAATAAAAACAGCCGCTTCGTTTTAGGAAACAGTTGAACACGATCAAAATGGCCTATTTAACGAAGAACCCCGCTGATGAAACTAGGTTCCTGTGTATATATCCAGCttacatcaacagtaaaaaGACATTAGCAGAGGGTCGAAGAATACCAATTGAGAAAGCTGTGGAGAACCCGTCCTGTGCTGAAATAAGGGATGTTCTTACTGCTGCAGGAATGAATGTCAATGTTGAGAACAAGATGTATCCAAGGGAATGGAATAGAGAGTtcagaggaagagtgagggtTCAGATCAAACAGGAAGATGACACTTTGTGCCAGGAGAAGTTTGCCTCAAGGAAAgatgttatgttttatgttgCTGAGATGATCCCAAAGTTGAAGACTAGAACACAGAAAAGTGGTGGAGGGGATTCAGGAGCTCAACAAGGAGAAGGAGGAAAGAagggaaagaagaagaagaagtaacTGCCTCTCCTGCAAATGAAGGAAGATTACATTTTTGGTCAGCTGATCAGTACAGAAACAAGCAATGACTGGTGTTACTTCATGAATTCAGTTTgtgaaaaactatttttattattattattttttaatctattatTTGGTTAAGGCAGTGACACTTGTTTTGATATGTGAACTTATCTGATCATGTGGAACATTCACTGTTTATGGTAAAGATGATTTTTACAGTGATTTATGTACatacatttagaacatttttccccacccaaa
>XM_007260762.2
GAACAGCAGGGGCGATGTGGTACTGACCCGGTAAGTTTACACGGAGAAGAGCGTGTAGCTGTCTGAGCCGCTGCCTGACTACAATGTGAGCACTGCTTTAAACCGAATAAAAACAGCCGCTTCGTTTTAGGAAACAGTTGAACACGATCAAAATGGCCTATTTAACGAAGAACCCCGCTGATGAAACTAGGTTCCTGTGTATATATCCAGCttacatcaacagtaaaaaGACATTAGCAGAGGGTCGAAGAATACCAATTGAGAAAGCTGTGGAGAACCCGTCCTGTGCTGAAATAAGGGATGTTCTTACTGCTGCAGGAATGAATGTCAATGTTGAGAACAAGATGTATCCAAGGGAATGGAATAGAGAGTtcagaggaagagtgagggtTCAGATCAAACAGGAAGATGACACTTTGTGCCAGGAGAAGTTTGCCTCAAGGAAAgatgttatgttttatgttgCTGAGATGATCCCAAAGTTGAAGACTAGAACACAGAAAAGTGGTGGAGGGGATTCAGGAGCTCAACAAGGAGAAGGAGGAAAGAagggaaagaagaagaagaagtaacTGCCTCTCCTGCAAATGAAGGAAGATTACATTTTTGGTCAGCTGATCAGTACAGAAACAAGCAATGACTGGTGTTACTTCATGAATTCAGTTTgtgaaaaactatttttattattattattttttaatctattatTTGGTTAAGGCAGTGACACTTGTTTTGATATGTGAACTTATCTGATCATGTGGAACATTCACTGTTTATGGTAAAGATGATTTTTACAGTGATTTATGTACatacatttagaacatttttccccacccaaaataaaaaatacagttgtCTCTTga

Function

symbol description
srp19 Predicted to enable 7S RNA binding activity. Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition. Predicted to act upstream of or within SRP-dependent cotranslational protein targeting to membrane. Predicted to be located in cytoplasm. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. Orthologous to human SRP19 (signal recognition particle 19).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0008152 metabolic process biological_process
GO:0048500 signal recognition particle cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0008312 7S RNA binding molecular_function

KEGG:

id description
K03105 SRP19; signal recognition particle subunit SRP19

RNA

RNA id representative length rna type GC content exon number start site end site
TU73348 False 859 TUCP 0.41 5 25545992 25549470
XM_007260762.2 True 863 mRNA 0.40 5 25546012 25549494

Neighbor

gene id symbol gene type direction distance location
nudt12 nudt12 coding upstream 14033 25522975 ~ 25531959 (+)
prdm6 prdm6 coding upstream 104782 25398983 ~ 25441210 (+)
snx2 snx2 coding upstream 199893 25323117 ~ 25346099 (+)
sncaip sncaip,LOC103399731 coding upstream 241877 25297056 ~ 25304115 (+)
znf438 NA coding upstream 830759 24641088 ~ 24715233 (+)
LOC103035659 LOC103035659,LOC108430319,LOC108265778,LOC106587031,LOC105014051 coding downstream 52907 25602401 ~ 25612117 (+)
LOC103036292 LOC103036292 coding downstream 75752 25625246 ~ 25633257 (+)
LOC103021869 NA coding downstream 87965 25637459 ~ 25640853 (+)
LOC103035969 LOC103035969,LOC108430321,LOC108265984 coding downstream 92812 25642306 ~ 25651303 (+)
aaed1 aaed1 coding downstream 980814 26530308 ~ 26534076 (+)
G54376 cep120,zgc:163014,LOC107712640 non-coding upstream 73996 25468054 ~ 25471996 (+)
LOC111192642 NA non-coding upstream 167751 25358002 ~ 25378241 (+)
G54310 NA non-coding upstream 319894 25225117 ~ 25226098 (+)
G54306 NA non-coding upstream 408998 25136435 ~ 25136994 (+)
G54303 NA non-coding upstream 447468 25098267 ~ 25098524 (+)
LOC111192644 NA non-coding downstream 3048 25552542 ~ 25561370 (+)
trnaw-cca_1 NA non-coding downstream 15167 25564661 ~ 25564732 (+)
trnaw-cca_2 NA non-coding downstream 15748 25565242 ~ 25565313 (+)
trnaw-cca_3 NA non-coding downstream 17401 25566895 ~ 25566966 (+)
trnaw-cca_4 NA non-coding downstream 19652 25569146 ~ 25569217 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 437121 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 1255227 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 3624398 21919225 ~ 21921594 (+)
LOC103028037 LOC108429162,LOC107684133,LOC108273534,LOC108430697,LOC108274369 other upstream 3798912 21673574 ~ 21747080 (+)
fbxo11 fbxo11,fbxo11b,LOC108430631,LOC105896971,LOC107728720,LOC107582786,LOC107550041 other upstream 4720318 20794025 ~ 20825674 (+)
LOC103040153 cdc14b,LOC108265480 other downstream 987558 26537052 ~ 26551570 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 1413398 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 1470750 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 1483341 27032835 ~ 27034938 (+)
LOC103030972 LOC108430356 other downstream 1661808 27211302 ~ 27222867 (+)

Expression


Co-expression Network