G54478


Basic Information

Item Value
gene id G54478
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25646115 ~ 25646745 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73452
CCTTGGGGTATAGCAGCAGTCATGGATTACAACACTAGTTAAAAGATAACTAgttaataaacagataaatcaACCACAGTGTACAAGCATAGGGCATGGctaataaaacagtttaaaatgtacaaaatggaGGCCTTGAATAAGAAAAAGGTGCAGCACTCCCACACTCAGAAATGCCAGCCCTTAAACTCTGATAACAAGGTCTGGAAATTTGTTTCCAAAACAGTCATTCTTTGTAGAAGATTGTAACAGTACTGGCAGCATATGTACTCTGAACCCACACGAAGAGGCATCTTGTAGATTTCTTTTTTAGTAGCCTACAGGAACTTTTCTGATTCCTGTGCCTATGGCTCTAAAATAGCTcaaaaatatcaaatcaaaaaaaaaaagaaaagaaaagagaagcgTCTGAACGGCACCAGAGAAAGACACAATTGTCTCAAATATGTTTATTGTGAAACATTATATTCAGCATGTTGCTCTAAGAAGAATGTCACAGACAAATAAAACATCCACAagacaaaaataagaaagaaaaaaaaatcacattacaaACAGTCTTCCCCTTAACCCACCCCTTGTTCCCCAGACCCAATACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73452 True 599 lncRNA 0.37 2 25646115 25646745

Neighbor

gene id symbol gene type direction distance location
LOC103021869 NA coding upstream 5262 25637459 ~ 25640853 (+)
LOC103036292 LOC103036292 coding upstream 12858 25625246 ~ 25633257 (+)
LOC103035659 LOC103035659,LOC108430319,LOC108265778,LOC106587031,LOC105014051 coding upstream 33998 25602401 ~ 25612117 (+)
nudt12 nudt12 coding upstream 114156 25522975 ~ 25531959 (+)
prdm6 prdm6 coding upstream 204905 25398983 ~ 25441210 (+)
aaed1 aaed1 coding downstream 883563 26530308 ~ 26534076 (+)
znf367 znf367,LOC107726881,LOC107704585,LOC107568105 coding downstream 906552 26553297 ~ 26556972 (+)
LOC103044252 smyd1b,LOC108430330,LOC108265070,LOC107569675,LOC107712675 coding downstream 972144 26618889 ~ 26640868 (+)
LOC103026093 LOC108430334,LOC107726882,LOC107704577,LOC100704522 coding downstream 1010055 26656800 ~ 26663942 (+)
mrps27 mrps27 coding downstream 1025211 26671956 ~ 26680317 (+)
trnaw-cca_39 NA non-coding upstream 47367 25598677 ~ 25598748 (+)
trnaw-cca_38 NA non-coding upstream 48200 25597844 ~ 25597915 (+)
trnaw-cca_37 NA non-coding upstream 49031 25597013 ~ 25597084 (+)
trnaw-cca_36 NA non-coding upstream 50365 25595679 ~ 25595750 (+)
trnaw-cca_35 NA non-coding upstream 51198 25594846 ~ 25594917 (+)
G54489 NA non-coding downstream 81638 25728383 ~ 25728597 (+)
G54499 NA non-coding downstream 130349 25777094 ~ 25796977 (+)
G54501 efna5,LOC104966306,LOC108265807,LOC108430322,LOC106915262 non-coding downstream 168671 25815416 ~ 25815745 (+)
G54529 NA non-coding downstream 447607 26094352 ~ 26096365 (+)
G54560 LOC103043953,LOC107704576,LOC108430333,LOC107573351,LOC107726869,LOC107579792 non-coding downstream 994952 26641697 ~ 26643753 (+)
srp19 srp19 other upstream 96621 25545992 ~ 25549494 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 537244 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 1355350 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 3724521 21919225 ~ 21921594 (+)
LOC103028037 LOC108429162,LOC107684133,LOC108273534,LOC108430697,LOC108274369 other upstream 3899035 21673574 ~ 21747080 (+)
LOC103040153 cdc14b,LOC108265480 other downstream 890307 26537052 ~ 26551570 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 1316147 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 1373499 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 1386090 27032835 ~ 27034938 (+)
LOC103030972 LOC108430356 other downstream 1564557 27211302 ~ 27222867 (+)

Expression


Co-expression Network