G54499


Basic Information

Item Value
gene id G54499
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25777094 ~ 25796977 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73476
CTCAGACACGTGTATATACAAATACagaccttgttttttttcccccattttattatttttttccaaaattttcTTTCGGTTTATACAGTGGGTTTGGGGAAAGCAGGTCAAATACAGCACCCAGAGAtgcgaagaaaaaaaaaatcataactgCAAAAAACAGAATGATACTAAGCACAGGAGCGCACAGGGGCTGGATCAATACACATACAGATGAGTTATCCCCATTCATGACAGATGGACCAGGTACAGGTTTGATaataatgactgaaataaaataaaataaaataaaactaacacaCAGTGAAGTCATCAGAGATGCCAGTAAGTGAAGGGCACAGAAACTGACATTGGCATTTTTTGAAGGACTTAAGGAGTAAGGCAGAGGAAGGCCACCTCAATTCCAATGAAGAGTAACTGCACCTTTTAGAGAGACGACAAACTACCAACAAAATTATACAACTAAAAGATCACACCTGACAAAATATGCTGTTcccagatagcaaaaatcaCTCGGGCCATTTTTGAGAAGAATACCATGCGCTGAGCCTGAGTTGCACCCATCTCACTCTGGTTTGAATCAAAGGATGATGCTGGCACAACTGCTCCGCTCATGTTTGGCTCGAATAGCAAAAATATACTTACACCcaggttgctgagtataatatggaaattggtCTATGGCTcttttgccaacaccccggctgcAGAGAATAATTTAGGAATCAGGTCAAACTGCTTGTACAAAAAACTCAGTTGTCGAATTCCATAAGGGAAGTGGCTTGTTACTGGGAAGggaccctggttgctgagtataatatgggaattggtcCAAACCGCTATTGCCAACACCCTTGTCGCAGAGTACAATAAGATAAGTGGTTGGTTTTAACTCCCTGGTTGTTGAGGATAATATGGGAATTAACCTATGGCGCTTTTACCAACACACACTctagttgagtataatatgtaaATTGGCCCAAGGCACATTTGCTAACACTGTAGATTACCAACTATAATATTAGACATGGCTTGAGCTGcttatgccaacaccccggttgctgagtataatatggaaattggtCTATGGCGcttttgccaacaccctggttgcagagtataatataggaatcggCCCAAACCGCTTGTGACAACACCCTTGTTACTGAGTACAATAAGGAAAGTGGCTTGTTCTAACTCACTgtttgcagagtataatatgtgaattAGCCCAAGCAACTTTTGCCAACACTCTGGTTGTTGAGTCTCAGATGATGTTGCCTTACAATACCCAAACATGGCCCAGTTCTTCATGC
>TU73477
CTCAGACACGTGTATATACAAATACagaccttgttttttttcccccattttattatttttttccaaaattttcTTTCGGTTTATACAGTGGGTTTGGGGAAAGCAGGTCAAATACAGCACCCAGAGAtgcgaagaaaaaaaaaatcataactgCAAAAAACAGAATGATACTAAGCACAGGAGCGCACAGGGGCTGGATCAATACACATACAGATGAGTTATCCCCATTCATGACAGATGGACCAGGTACAGGTTTGATaataatgactgaaataaaataaTgtcttactgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73476 True 1316 lncRNA 0.41 2 25777094 25778913
TU73477 False 915 lncRNA 0.12 2 25777094 25796977

Neighbor

gene id symbol gene type direction distance location
LOC103035969 LOC103035969,LOC108430321,LOC108265984 coding upstream 125791 25642306 ~ 25651303 (+)
LOC103021869 NA coding upstream 136241 25637459 ~ 25640853 (+)
LOC103036292 LOC103036292 coding upstream 143837 25625246 ~ 25633257 (+)
LOC103035659 LOC103035659,LOC108430319,LOC108265778,LOC106587031,LOC105014051 coding upstream 164977 25602401 ~ 25612117 (+)
nudt12 nudt12 coding upstream 245135 25522975 ~ 25531959 (+)
aaed1 aaed1 coding downstream 733331 26530308 ~ 26534076 (+)
znf367 znf367,LOC107726881,LOC107704585,LOC107568105 coding downstream 756320 26553297 ~ 26556972 (+)
LOC103044252 smyd1b,LOC108430330,LOC108265070,LOC107569675,LOC107712675 coding downstream 821912 26618889 ~ 26640868 (+)
LOC103026093 LOC108430334,LOC107726882,LOC107704577,LOC100704522 coding downstream 859823 26656800 ~ 26663942 (+)
mrps27 mrps27 coding downstream 874979 26671956 ~ 26680317 (+)
G54489 NA non-coding upstream 48497 25728383 ~ 25728597 (+)
G54478 NA non-coding upstream 130349 25646115 ~ 25646745 (+)
trnaw-cca_39 NA non-coding upstream 178346 25598677 ~ 25598748 (+)
trnaw-cca_38 NA non-coding upstream 179179 25597844 ~ 25597915 (+)
trnaw-cca_37 NA non-coding upstream 180010 25597013 ~ 25597084 (+)
G54501 efna5,LOC104966306,LOC108265807,LOC108430322,LOC106915262 non-coding downstream 18439 25815416 ~ 25815745 (+)
G54529 NA non-coding downstream 297375 26094352 ~ 26096365 (+)
G54560 LOC103043953,LOC107704576,LOC108430333,LOC107573351,LOC107726869,LOC107579792 non-coding downstream 844720 26641697 ~ 26643753 (+)
G54611 NA non-coding downstream 883654 26680631 ~ 26681078 (+)
G54614 NA non-coding downstream 884117 26681094 ~ 26681334 (+)
srp19 srp19 other upstream 227600 25545992 ~ 25549494 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 668223 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 1486329 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 3855500 21919225 ~ 21921594 (+)
LOC103028037 LOC108429162,LOC107684133,LOC108273534,LOC108430697,LOC108274369 other upstream 4030014 21673574 ~ 21747080 (+)
LOC103040153 cdc14b,LOC108265480 other downstream 740075 26537052 ~ 26551570 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 1165915 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 1223267 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 1235858 27032835 ~ 27034938 (+)
LOC103030972 LOC108430356 other downstream 1414325 27211302 ~ 27222867 (+)

Expression


Co-expression Network