G54529


Basic Information

Item Value
gene id G54529
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26094352 ~ 26096365 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73510
CACCATTCATTTACTGATAATCAGACATCACACATTCAGCACATCACACAGTCTAAACGAGAGAACACACACGTACGCGTACACACTCAAACAGTTTCAAACAGTCGAGGAGGCTGGAGAGAAGTAggattgtacttttttttttcttttttaatcaaCTCAAATCCCAAAGTACAGTAAGAGATAACACAATGTAACTAACCTGCTGCCCCTCTTTAACATGTGACGCAGTGCAACAGCTACGGAAACTGACCTCGGCTAGTTGTACACaatgttatttttcttattttttttgttcctgttTCTCCATATTCCCGGATATATCACATACTATATAAGAATTCAGGgacattctttctttctttctttctttctttctttcctactGTGAAGTTTGCATTCAgtgttgtattgtttgtattgtcTTTTCATGAGGTCGCCTACTTCActggacctaaaaaaaaaaaaaaactctaaagaaACAGGGACCGAAAGGtaccattatatatattttgcgaGTCGAGCCCACATTCATCAAGGCAGTTGCACAACTCTTCTGCACGACTCGGACAATAATAACACAGATACCGAAGAATAAGAGTTCAACACATCTCTAATACTGAAAATATTCAAACTAACCACATTTGAGTCctcgcctttttttttttttcttcttttttttttatgttttatatggtCTCTTTCTTAATAAAAAGTCTAAACATTTAGCCCTAATGGTCACCTTGACCGTTATCTGAAATCTTCTAAAAACCTTTATATAAGAAAGGCTACGACGAACCTTTTAGAAATCTGAAGGCGGCAGAAGATTACAGTCCGTTTCAACAGGTTTAATGAGGAGGAGGTGAGCAGTGCTGTGAATGCAGTCAGTGTTTCTGCATTTCAGAGAGTTTAGACTCAaactaaataagaaaaaaaaaaaaaaaaaaaagctaaataaaaaaaaaaaatcaactcaaATCTGCTGCTCAACTCAAAAAAGTAGTAAACTACTCATCAGATACTCTGGTGCTCAGTTGGATCTCACTGCTGGAATAAAAGGATGGTCTCAGAGTAGAGTGTGTGCTATAGGTCtgctagcaaaaaaaaaaagacgtatGCAGCTATATACTATGTTCTGGATGTCTAAAACGTAAAGTCTGGAAGTATCTCGCACTCACATCTGCCTCAGAACAGATGTCTGGCGAACAACACACTAACATACTAGCGGAGCTGAAATGGCACTAGCACATCAACGTTAGCGCTCTCAGAACTGACCAGCTGTGCTGAAAAAAGGAAGGCAAACATGAGTTCATCTGTGTAGATGTGACTGGGTgggagtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtctatGTGTGTTGGCTAGGACGCAGTGGAGGTGTTGGGGCTCCAGCCCATCTGATAGGCCCGCTCCAGCGTCCGCTTACAGTCTTGCATCACCGTGCTGAACACTATGTGCGGATACTGCAGGAccagtctctccacagtctcCTCGTTCac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73510 True 1526 lncRNA 0.40 2 26094352 26096365

Neighbor

gene id symbol gene type direction distance location
LOC103035969 LOC103035969,LOC108430321,LOC108265984 coding upstream 443049 25642306 ~ 25651303 (+)
LOC103021869 NA coding upstream 453499 25637459 ~ 25640853 (+)
LOC103036292 LOC103036292 coding upstream 461095 25625246 ~ 25633257 (+)
LOC103035659 LOC103035659,LOC108430319,LOC108265778,LOC106587031,LOC105014051 coding upstream 482235 25602401 ~ 25612117 (+)
nudt12 nudt12 coding upstream 562393 25522975 ~ 25531959 (+)
aaed1 aaed1 coding downstream 433943 26530308 ~ 26534076 (+)
znf367 znf367,LOC107726881,LOC107704585,LOC107568105 coding downstream 456932 26553297 ~ 26556972 (+)
LOC103044252 smyd1b,LOC108430330,LOC108265070,LOC107569675,LOC107712675 coding downstream 522524 26618889 ~ 26640868 (+)
LOC103026093 LOC108430334,LOC107726882,LOC107704577,LOC100704522 coding downstream 560435 26656800 ~ 26663942 (+)
mrps27 mrps27 coding downstream 575591 26671956 ~ 26680317 (+)
G54501 efna5,LOC104966306,LOC108265807,LOC108430322,LOC106915262 non-coding upstream 278607 25815416 ~ 25815745 (+)
G54499 NA non-coding upstream 297375 25777094 ~ 25796977 (+)
G54489 NA non-coding upstream 365755 25728383 ~ 25728597 (+)
G54478 NA non-coding upstream 447607 25646115 ~ 25646745 (+)
trnaw-cca_39 NA non-coding upstream 495604 25598677 ~ 25598748 (+)
G54560 LOC103043953,LOC107704576,LOC108430333,LOC107573351,LOC107726869,LOC107579792 non-coding downstream 545332 26641697 ~ 26643753 (+)
G54611 NA non-coding downstream 584266 26680631 ~ 26681078 (+)
G54614 NA non-coding downstream 584729 26681094 ~ 26681334 (+)
G54673 NA non-coding downstream 839565 26935930 ~ 26968187 (+)
G54680 NA non-coding downstream 849447 26945812 ~ 26946875 (+)
srp19 srp19 other upstream 544858 25545992 ~ 25549494 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 985481 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 1803587 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 4172758 21919225 ~ 21921594 (+)
LOC103028037 LOC108429162,LOC107684133,LOC108273534,LOC108430697,LOC108274369 other upstream 4347272 21673574 ~ 21747080 (+)
LOC103040153 cdc14b,LOC108265480 other downstream 440687 26537052 ~ 26551570 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 866527 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 923879 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 936470 27032835 ~ 27034938 (+)
LOC103030972 LOC108430356 other downstream 1114937 27211302 ~ 27222867 (+)

Expression


Co-expression Network