G54560 (LOC103043953,LOC107704576,LOC108430333,LOC107573351,LOC107726869,LOC107579792)



Basic Information


Item Value
gene id G54560
gene name LOC103043953,LOC107704576,LOC108430333,LOC107573351,LOC107726869,LOC107579792
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26641697 ~ 26643753 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU73558
ACTTTCGTGAATCCTACTCCAGGTTTGTAATAGAAATGTGAAAGAACCAGAATTTGTAACAAACCTTTTCAGTACACTTAGTCTTTTTATCCACAAAAATGCTTCTTAAAGAAATATTCACTGAAGGTTCTTTAGGATCTCTGTGTTAGACCTAGGCCCACAAGGCCGTATCTGGACACCCCTCATTTATTAATAGCCATTAAAGAATTTAGCTGTAGATATCTCCAGTTTTTACTCACGTTGACGAGTGTGTTGCCATCAACAAGCTCTGTGACTGACTCAATGCCCTTCAGAGTGACCTTCAGCTTGTTGCCCTCTTTCATCACCACagactggaaataaaaaaaaaacaaagataaaagaCACTTTTAGTATTATTGTTATGATTGTTATTTGatagtataaataatatatgttatGTAATACAGTGCATTAAAACTATTGTCCAGTATTATTGACAGTAATAGCAACACttaatacaataattataaatatccAATAACTACTGCTTAAAATGTAGAGTAAGAGGTCCTTTGTTAGTTTATAAACATGAAACGATTCTGATTTGTTCTTTGGATGCATGATATGCTCTTTATCCCAAAAGCTTCTTTGCACAGAGATGATTCTTAGGTGGTCAAGAGGAGCACTCTTTCTCTATGATAAGATATTCTCACTGCTAAGGCGTGTTTGAAAAATTAGGCCCTGATCTTTGAGAGCATTAAGCAGTGTAAAAAGGACAAAGGTCCTTCAGAAAGATAGCAGCCTTGCCTTGATCTTCTCTCCAGTCAGGGTCTCGAGATCAGCCTCCTGGCCCACAGTAAAGGAGTTGACCAGGACTTTGGTCCCTGTGGTCACAGTCACTTTAAAGTGGTCTCCATTCTGCTCGATCTCTGAGGTGCTCTTGATGTCCTTGCCTTTCTCGATGAGGTCATCGGGAAGACCTGCAAGAACCTTCATGAAAGGCACAAAGCCCTCCTGGCTGTCCAGCTGATATTTTCCAGAGAAGGACATTGTGACTAGAGACCACACGAGAGGAGAAGACTGACGGCCtcaaatgctttttatattgtTTCTATAGCTCTGTAATGATTAACCGCAGGGGGCGGAGATGCTCTCTGCCCTTGCTGACCCTTGCAAAAGTTGCTTGTCAGTTTACAGATCAATATCAGTATAATCTGTCATTATTTTGTGTCCACGgcatagttgtttaaatttcatatgAACACTGTGCAACAATATATTGTACTTTCATTGATTTACCctgtttaaaacacattattactgtacatatatagcCTACATGGAAATGCAAACTTTCACTTTGTAAAACTGAATGATTCTTTTAACtgattaacacatttttttaagtttttatgatttttagtaatttaagtaaattaaataaaaagtgattaggCTAAAAAATGATTTCTGTGTC

Function


NR:

description
fatty acid binding protein 1-B.1-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU73558 True 1438 lncRNA 0.37 2 26641697 26643753

Neighbor


gene id symbol gene type direction distance location
LOC103044252 smyd1b,LOC108430330,LOC108265070,LOC107569675,LOC107712675 coding upstream 829 26618889 ~ 26640868 (+)
znf367 znf367,LOC107726881,LOC107704585,LOC107568105 coding upstream 84725 26553297 ~ 26556972 (+)
aaed1 aaed1 coding upstream 107621 26530308 ~ 26534076 (+)
LOC103035969 LOC103035969,LOC108430321,LOC108265984 coding upstream 990394 25642306 ~ 25651303 (+)
LOC103021869 NA coding upstream 1000844 25637459 ~ 25640853 (+)
LOC103026093 LOC108430334,LOC107726882,LOC107704577,LOC100704522 coding downstream 13047 26656800 ~ 26663942 (+)
mrps27 mrps27 coding downstream 28203 26671956 ~ 26680317 (+)
LOC103025471 LOC103025471,LOC108430308 coding downstream 47732 26691485 ~ 26701609 (+)
LOC103031601 loxhd1b,loxhd1,LOC108265797,LOC108233688 coding downstream 69307 26713060 ~ 26760226 (+)
LOC103031292 ppp2r2aa,LOC108430337,LOC107671018,LOC107713030,LOC107699615,LOC106585558 coding downstream 140467 26784220 ~ 26796027 (+)
G54529 NA non-coding upstream 545332 26094352 ~ 26096365 (+)
G54501 efna5,LOC104966306,LOC108265807,LOC108430322,LOC106915262 non-coding upstream 825952 25815416 ~ 25815745 (+)
G54499 NA non-coding upstream 844720 25777094 ~ 25796977 (+)
G54489 NA non-coding upstream 913100 25728383 ~ 25728597 (+)
G54478 NA non-coding upstream 994952 25646115 ~ 25646745 (+)
G54611 NA non-coding downstream 36878 26680631 ~ 26681078 (+)
G54614 NA non-coding downstream 37341 26681094 ~ 26681334 (+)
G54673 NA non-coding downstream 292177 26935930 ~ 26968187 (+)
G54680 NA non-coding downstream 302059 26945812 ~ 26946875 (+)
G54683 NA non-coding downstream 325610 26969363 ~ 26970882 (+)
LOC103040153 cdc14b,LOC108265480 other upstream 90127 26537052 ~ 26551570 (+)
srp19 srp19 other upstream 1092203 25545992 ~ 25549494 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 1532826 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 2350932 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 4720103 21919225 ~ 21921594 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 319139 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 376491 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 389082 27032835 ~ 27034938 (+)
LOC103030972 LOC108430356 other downstream 567549 27211302 ~ 27222867 (+)
LOC107197454 NA other downstream 1020029 27663782 ~ 27668662 (+)

Expression



Co-expression Network