G54611


Basic Information

Item Value
gene id G54611
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26680631 ~ 26681078 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73628
ctcagtagtgctattctaataataatatttttgccACATTTTTACCTGAGCAGTTTGGTCATAGTTTACCTCAACAGTGATATTTTGgttatatagtgatatattgcAGCAAAGCAGgctaaaatattgttttctccACTTTTTTTACTACTATTCTACACTCGGTATGATGTTTTGGTaatgtgcagtgtttttttatgcctGAAGTACTGCAGTGATAGATCAGTCTGTATCATTGTGAAAtgccaaacaaaaaaaggtcactaatattttgttggaccgcctttagttTTGATTGCGGCACGCATTCGCAGTGGCATTATttctataagcttctgcaacgttACAAAGTTTATTTagaatccagtgttgcattaattatgctttgtaaattaaattactgtatGTTTACTTTACAGGGTGCagtgtacagctctgtaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73628 True 448 lncRNA 0.33 1 26680631 26681078

Neighbor

gene id symbol gene type direction distance location
mrps27 mrps27 coding upstream 314 26671956 ~ 26680317 (+)
LOC103026093 LOC108430334,LOC107726882,LOC107704577,LOC100704522 coding upstream 16689 26656800 ~ 26663942 (+)
LOC103044252 smyd1b,LOC108430330,LOC108265070,LOC107569675,LOC107712675 coding upstream 39763 26618889 ~ 26640868 (+)
znf367 znf367,LOC107726881,LOC107704585,LOC107568105 coding upstream 123659 26553297 ~ 26556972 (+)
aaed1 aaed1 coding upstream 146555 26530308 ~ 26534076 (+)
LOC103025471 LOC103025471,LOC108430308 coding downstream 10407 26691485 ~ 26701609 (+)
LOC103031601 loxhd1b,loxhd1,LOC108265797,LOC108233688 coding downstream 31982 26713060 ~ 26760226 (+)
LOC103031292 ppp2r2aa,LOC108430337,LOC107671018,LOC107713030,LOC107699615,LOC106585558 coding downstream 103142 26784220 ~ 26796027 (+)
LOC103024632 bnip3la,LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107671016 coding downstream 116233 26797311 ~ 26810688 (+)
LOC103024323 dpysl2a,dpysl2b,dpysl2,LOC108430340,LOC108266046,LOC107713031,LOC108277094,LOC108427246,LOC107678023 coding downstream 138503 26819581 ~ 26861864 (+)
G54560 LOC103043953,LOC107704576,LOC108430333,LOC107573351,LOC107726869,LOC107579792 non-coding upstream 36878 26641697 ~ 26643753 (+)
G54529 NA non-coding upstream 584266 26094352 ~ 26096365 (+)
G54501 efna5,LOC104966306,LOC108265807,LOC108430322,LOC106915262 non-coding upstream 864886 25815416 ~ 25815745 (+)
G54499 NA non-coding upstream 883654 25777094 ~ 25796977 (+)
G54489 NA non-coding upstream 952034 25728383 ~ 25728597 (+)
G54614 NA non-coding downstream 16 26681094 ~ 26681334 (+)
G54673 NA non-coding downstream 254852 26935930 ~ 26968187 (+)
G54680 NA non-coding downstream 264734 26945812 ~ 26946875 (+)
G54683 NA non-coding downstream 288285 26969363 ~ 26970882 (+)
G54686 es1,LOC108430344,LOC107553036,LOC107671040,LOC107552194,LOC107714552 non-coding downstream 337983 27019061 ~ 27020194 (+)
LOC103040153 cdc14b,LOC108265480 other upstream 129061 26537052 ~ 26551570 (+)
srp19 srp19 other upstream 1131137 25545992 ~ 25549494 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 1571760 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 2389866 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 4759037 21919225 ~ 21921594 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 281814 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 339166 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 351757 27032835 ~ 27034938 (+)
LOC103030972 LOC108430356 other downstream 530224 27211302 ~ 27222867 (+)
LOC107197454 NA other downstream 982704 27663782 ~ 27668662 (+)

Expression


Co-expression Network