G54680


Basic Information

Item Value
gene id G54680
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26945812 ~ 26946875 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73714
cctaatgattattttttaaacgattattctaacgattatttttttcgattagtcgactaatctatttattgagaaacatatttaaataactattattttacgttttaaagcaaacgataaattactatatttatatataataacaacaacaacagcctactaaaccaaaccccacacttataatcacttacatgtacaacacgttgtttagatctattacgctaaaaatggataagctcccatacaccacctccgtgtgttgttttctgtgaccgctagattttgtgaccactggtaagtagttctcagcagaccggtgcactggccgattcgaaacgtgttcgtttctaatgtttaccccgactggccaaaacagttaagtttagggctgagggtaaggtgtaggtatagaaagcttctgttttgccaatgaacgctcataaccgtgagcactggtcacaaaattccgacggtgacagaaaacggtgtgacaccgcagcgccgacggcgctagctaaaataacttaaggcagctagcttagctaaacacctgaacttatgaataatgctactgtttctggaaactgcgaaatgccatgcacaaatataaaccaaaaatgtataatttctgcctgtggcaggtttaaaacctttggtagacagccttaagtctttttaaggacacccgcggagaccctgatgtaaacggtaacttactgtgtgactctgttgacatagtgctcctggatgtttgcgcttcaagtgctcctgcATAGCAGTTGTGCTACTGTGATAGACCATCCccattttgcacatatggcagaggaccacattgttgcccttttgcgtgaaatgctcccaaactttagatgcccgctggcgtttttttgtagctggagatcgctctccggagtccatgctctccacaggcaccgccatgtttacgacgcgccgacgcgcgttatgcaaatcgatgtattttcttaatcgatgacgtcgattatgtcgacgcgtcgccccag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73714 True 1022 lncRNA 0.42 2 26945812 26946875

Neighbor

gene id symbol gene type direction distance location
LOC103024323 dpysl2a,dpysl2b,dpysl2,LOC108430340,LOC108266046,LOC107713031,LOC108277094,LOC108427246,LOC107678023 coding upstream 83948 26819581 ~ 26861864 (+)
LOC103024632 bnip3la,LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107671016 coding upstream 135124 26797311 ~ 26810688 (+)
LOC103031292 ppp2r2aa,LOC108430337,LOC107671018,LOC107713030,LOC107699615,LOC106585558 coding upstream 149785 26784220 ~ 26796027 (+)
LOC103031601 loxhd1b,loxhd1,LOC108265797,LOC108233688 coding upstream 185586 26713060 ~ 26760226 (+)
LOC103025471 LOC103025471,LOC108430308 coding upstream 244203 26691485 ~ 26701609 (+)
LOC103022969 LOC108430342 coding downstream 28057 26974932 ~ 27018977 (+)
ciao1 ciao1,LOC106579887,LOC107714582 coding downstream 89249 27036124 ~ 27041538 (+)
cdc45 cdc45,LOC107699634,LOC107670985 coding downstream 103429 27050304 ~ 27059342 (+)
LOC103046559 LOC108430351,LOC103046559,LOC108265487,LOC105014311 coding downstream 129492 27076367 ~ 27118700 (+)
sept5 sept5,LOC107713038,LOC102226618 coding downstream 173936 27120811 ~ 27141616 (+)
G54614 NA non-coding upstream 264478 26681094 ~ 26681334 (+)
G54611 NA non-coding upstream 264734 26680631 ~ 26681078 (+)
G54560 LOC103043953,LOC107704576,LOC108430333,LOC107573351,LOC107726869,LOC107579792 non-coding upstream 302059 26641697 ~ 26643753 (+)
G54529 NA non-coding upstream 849447 26094352 ~ 26096365 (+)
G54501 efna5,LOC104966306,LOC108265807,LOC108430322,LOC106915262 non-coding upstream 1130067 25815416 ~ 25815745 (+)
G54683 NA non-coding downstream 22488 26969363 ~ 26970882 (+)
G54686 es1,LOC108430344,LOC107553036,LOC107671040,LOC107552194,LOC107714552 non-coding downstream 72186 27019061 ~ 27020194 (+)
G54693 ufd1l,LOC106585051,LOC106580431 non-coding downstream 99271 27046146 ~ 27049083 (+)
G54734 NA non-coding downstream 200540 27147415 ~ 27578063 (+)
G54735 NA non-coding downstream 210071 27156946 ~ 27157648 (+)
LOC103040153 cdc14b,LOC108265480 other upstream 394242 26537052 ~ 26551570 (+)
srp19 srp19 other upstream 1396318 25545992 ~ 25549494 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 1836941 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 2655047 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 5024218 21919225 ~ 21921594 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 16017 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 73369 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 85960 27032835 ~ 27034938 (+)
LOC103030972 LOC108430356 other downstream 264427 27211302 ~ 27222867 (+)
LOC107197454 NA other downstream 716907 27663782 ~ 27668662 (+)

Expression


Co-expression Network