G54686 (es1,LOC108430344,LOC107553036,LOC107671040,LOC107552194,LOC107714552)


Basic Information

Item Value
gene id G54686
gene name es1,LOC108430344,LOC107553036,LOC107671040,LOC107552194,LOC107714552
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27019061 ~ 27020194 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73720
CCATGATACATCTTTAGATGTTTAACAgtcatatacatacagtacataaaaatacacacacacacacaacatagtACAACACAGACAGCCTGCATTGGatgcttattttatttactctctGTATGCCTGCAGTGTAGCAGGTTCAGGTCAACCTAAAGtttcagctttttttattaaaaccttCCAACTGCGTTTCTTGCAGAACTCACTTTGAGGTCATGCGCATGACATGCTTCACCATGTTTCCAATGCCGTCAAAGATGTAGTGATAATGGTAGTCTGTCTCCCACATGAAGCTTGGGGTGCTGATCACCTTGTTTTTCTCGTCCACATAGGCCTCGTAGGGCTCGCGGATGTTGTGGCGAGCACCCATGCTCTTGACAGCCTGCACCATGTTGGTGTTGGGCCAGCGTCCCCAGCGACTGCTCTCATCCCGCTCGTAACCCATGGTGATCTCCAGATTTGGCAGCACCCGGCATGCCAGCAGAGGAGACATGctggacaaactgtaaaaaaaaaaaaagagacagaaacaaaGCTGAG

Function

symbol description
es1 Acts upstream of or within mitochondrion morphogenesis. Located in mitochondrion. Is expressed in eye and retinal cone cell. Orthologous to human GATD3 (glutamine amidotransferase class 1 domain containing 3).

NR:

description
PREDICTED: ES1 protein, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73720 True 543 lncRNA 0.46 2 27019061 27020194

Neighbor

gene id symbol gene type direction distance location
LOC103022969 LOC108430342 coding upstream 84 26974932 ~ 27018977 (+)
LOC103024323 dpysl2a,dpysl2b,dpysl2,LOC108430340,LOC108266046,LOC107713031,LOC108277094,LOC108427246,LOC107678023 coding upstream 157197 26819581 ~ 26861864 (+)
LOC103024632 bnip3la,LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107671016 coding upstream 208373 26797311 ~ 26810688 (+)
LOC103031292 ppp2r2aa,LOC108430337,LOC107671018,LOC107713030,LOC107699615,LOC106585558 coding upstream 223034 26784220 ~ 26796027 (+)
LOC103031601 loxhd1b,loxhd1,LOC108265797,LOC108233688 coding upstream 258835 26713060 ~ 26760226 (+)
ciao1 ciao1,LOC106579887,LOC107714582 coding downstream 15930 27036124 ~ 27041538 (+)
cdc45 cdc45,LOC107699634,LOC107670985 coding downstream 30110 27050304 ~ 27059342 (+)
LOC103046559 LOC108430351,LOC103046559,LOC108265487,LOC105014311 coding downstream 56173 27076367 ~ 27118700 (+)
sept5 sept5,LOC107713038,LOC102226618 coding downstream 100617 27120811 ~ 27141616 (+)
gp1bb gp1bb coding downstream 135350 27155544 ~ 27160566 (+)
G54683 NA non-coding upstream 48179 26969363 ~ 26970882 (+)
G54673 NA non-coding upstream 50874 26935930 ~ 26968187 (+)
G54680 NA non-coding upstream 72186 26945812 ~ 26946875 (+)
G54614 NA non-coding upstream 337727 26681094 ~ 26681334 (+)
G54611 NA non-coding upstream 337983 26680631 ~ 26681078 (+)
G54693 ufd1l,LOC106585051,LOC106580431 non-coding downstream 25952 27046146 ~ 27049083 (+)
G54734 NA non-coding downstream 127221 27147415 ~ 27578063 (+)
G54735 NA non-coding downstream 136752 27156946 ~ 27157648 (+)
G54747 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007 non-coding downstream 206256 27226450 ~ 27236132 (+)
LOC111192651 NA non-coding downstream 697781 27717975 ~ 27719836 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other upstream 46035 26962892 ~ 26973026 (+)
LOC103040153 cdc14b,LOC108265480 other upstream 467491 26537052 ~ 26551570 (+)
srp19 srp19 other upstream 1469567 25545992 ~ 25549494 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 1910190 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 2728296 24254187 ~ 24290765 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 50 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 12641 27032835 ~ 27034938 (+)
LOC103030972 LOC108430356 other downstream 191108 27211302 ~ 27222867 (+)
LOC107197454 NA other downstream 643588 27663782 ~ 27668662 (+)
G54841 NA other downstream 683578 27703772 ~ 27712578 (+)

Expression


Co-expression Network