G54693 (ufd1l,LOC106585051,LOC106580431)


Basic Information

Item Value
gene id G54693
gene name ufd1l,LOC106585051,LOC106580431
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27046146 ~ 27049083 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73732
CTTTAGGGTTTGTGATGTCCAAGAAGTCTGGACTCTGAGGCTGAAATTTGGAGTAAGTTGCCACCATGAGATTGACACTCTCAACCTGGACCAAACCTCCTTCTTCCAATAACAGGTTCTGCATCATcCAGTGGGGAAGGTAGCAGATCCCTTCATCAGCAACAAACTCCAGGACACCACAATGGGTCATTCTGTCTGAGTTCTTATTGGTGAGTTTGAACAGCATGGGGTATGTGATGTTAAGTCTGCTAAGCTGGTCCAGTGCTGATGGGGGCATTATAAtttttcctcctttttccaCGTCTGAGCGGTCATTGGGTCCCGCCAGCATCGACACCGAGTAGCAGCGGTACTGTGTGGAGAAGCGGTTCTGGAAGGCCCGAGGCATCGGGTGATCAAACATGTTGAAGGAAAACATGTTGTCTGAATACGCTTTACTTCTCTCAGAAATACTGCAGAAATCAGACTGACGCTACTGTACAAAAACACACTACTATCCTCTTCCCAGGGAAACGCTGAGTATACAGGATGTGACGCCTCCCCACAACAAAACACCTCCGCCC

Function

symbol description
ufd1l Predicted to enable polyubiquitin modification-dependent protein binding activity. Acts upstream of or within cellular response to xenobiotic stimulus. Predicted to be part of VCP-NPL4-UFD1 AAA ATPase complex. Human ortholog(s) of this gene implicated in DiGeorge syndrome and schizophrenia. Orthologous to human UFD1 (ubiquitin recognition factor in ER associated degradation 1).

NR:

description
LOW QUALITY PROTEIN: ubiquitin recognition factor in ER-associated degradation protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73732 True 563 lncRNA 0.48 5 27046146 27049083

Neighbor

gene id symbol gene type direction distance location
ciao1 ciao1,LOC106579887,LOC107714582 coding upstream 4608 27036124 ~ 27041538 (+)
LOC103022969 LOC108430342 coding upstream 27169 26974932 ~ 27018977 (+)
LOC103024323 dpysl2a,dpysl2b,dpysl2,LOC108430340,LOC108266046,LOC107713031,LOC108277094,LOC108427246,LOC107678023 coding upstream 184282 26819581 ~ 26861864 (+)
LOC103024632 bnip3la,LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107671016 coding upstream 235458 26797311 ~ 26810688 (+)
LOC103031292 ppp2r2aa,LOC108430337,LOC107671018,LOC107713030,LOC107699615,LOC106585558 coding upstream 250119 26784220 ~ 26796027 (+)
cdc45 cdc45,LOC107699634,LOC107670985 coding downstream 1221 27050304 ~ 27059342 (+)
LOC103046559 LOC108430351,LOC103046559,LOC108265487,LOC105014311 coding downstream 27284 27076367 ~ 27118700 (+)
sept5 sept5,LOC107713038,LOC102226618 coding downstream 71728 27120811 ~ 27141616 (+)
gp1bb gp1bb coding downstream 106461 27155544 ~ 27160566 (+)
dhx37 dhx37 coding downstream 115184 27164267 ~ 27181242 (+)
G54686 es1,LOC108430344,LOC107553036,LOC107671040,LOC107552194,LOC107714552 non-coding upstream 25952 27019061 ~ 27020194 (+)
G54683 NA non-coding upstream 75264 26969363 ~ 26970882 (+)
G54673 NA non-coding upstream 77959 26935930 ~ 26968187 (+)
G54680 NA non-coding upstream 99271 26945812 ~ 26946875 (+)
G54614 NA non-coding upstream 364812 26681094 ~ 26681334 (+)
G54734 NA non-coding downstream 98332 27147415 ~ 27578063 (+)
G54735 NA non-coding downstream 107863 27156946 ~ 27157648 (+)
G54747 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007 non-coding downstream 177367 27226450 ~ 27236132 (+)
LOC111192651 NA non-coding downstream 668892 27717975 ~ 27719836 (+)
G54929 NA non-coding downstream 722441 27771524 ~ 27802691 (+)
G54690 tmem127,LOC107552193,LOC106579884 other upstream 11208 27032835 ~ 27034938 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other upstream 23255 27020244 ~ 27022891 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other upstream 73120 26962892 ~ 26973026 (+)
LOC103040153 cdc14b,LOC108265480 other upstream 494576 26537052 ~ 26551570 (+)
srp19 srp19 other upstream 1496652 25545992 ~ 25549494 (+)
LOC103030972 LOC108430356 other downstream 162219 27211302 ~ 27222867 (+)
LOC107197454 NA other downstream 614699 27663782 ~ 27668662 (+)
G54841 NA other downstream 654689 27703772 ~ 27712578 (+)
ipo11 ipo11 other downstream 765132 27814215 ~ 27938389 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other downstream 1596981 28646064 ~ 28656818 (+)

Expression


Co-expression Network