G54734


Basic Information

Item Value
gene id G54734
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27147415 ~ 27578063 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73796
tattattattaatattattattattattataattattattatattagagtTTTATGTTCTATCCTGACAACTCATTTGCCACAGGATAATCAGTGTTTGATGAGTAGAAGGAGTCAGAGGAGGTCTTAGTTTTGACCTTATTGTACGAGCTGCCTATGCACTGATGACAGTGACCCTAAATGACCCAAAAAACACCCATACCACACACAGACTAACCTCCTGTAACCTCTTTACAGGAAATTTACCTGCAAGACCTGCAGTTTCATGACTTACACATTTCAAGAGACACATTTTTCAATCTGTCATTGGGAAGATGGTTTAAAATCCCTGAATCGCCCCGAGCTAAACAAACGATCCTTTATTTAGAGACTGCCAACATCTGTACGCTTtctgacacacacactttcagaaACTCAGTGTAGTTTTAACTGCATAAAAGGCTGAGtgagttttatttttccatCTATCTCTCTGTGAACTTTTTTCACccttttgccctttttttccTTCTAGTACGACTGAACGTATTGCTCCGTCTCAAGGAGTCCACATGAACAGTGACGAGTCAGTTTCACAGGTGGACTGGGTAGCAGGTAGCCGCTTGATCTATGAATGACTTACCATTAACATCAATCCATGAatgtgaattgtttttttttttttttttTTTTTCaaaa
>TU73798
TTCTATCCTGACAACTCATTTGCCACAGGATAATCAGTGTTTGATGAGTAGAAGGAGTCAGAGGAGGTCTTAGTTTTGACCTTATTGTACGAGCTGCCTATGCACTGATGACAGTGACCCTAAATGACCCAAAAAACACCCATACCACACACAGACTAACCTCCTGTAACCTCTTTACAGGAAATTTACCTGCAAGACCTGCAGTTTCATGACTTACACATTTCAAGAGACACATTTTTCAATCTGTCATTGGGAAGATGGTTTAAAATCCCTGAATCGCCCCGAGCTAAACAAACGATCCTTTATTTAGAGACTGCCAACATCTGTACGCTTtctgacacacacactttcagaaACTCAGTGTAGTTTTAACTGCATAAAAGGCTGAGtgagttttatttttccatCTATCTCTCTGTGAACTTTTTTCACccttttgccctttttttccTTCTAGTACGACTGAACGTATTGCTCCGTCTCAAGGAGTCCACATGAACAGTGACGAGTCAGTTTCACAGGTGGACTGGGTAGCAGGTAGCCGCTTGATCTATGAATGACTTACCATTAACATCAATCCATGAatgtgaattgtttttttttttttttttTTTTTCaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73796 True 677 lncRNA 0.37 3 27147415 27578063
TU73798 False 621 lncRNA 0.40 2 27505158 27578063

Neighbor

gene id symbol gene type direction distance location
sept5 sept5,LOC107713038,LOC102226618 coding upstream 5799 27120811 ~ 27141616 (+)
LOC103046559 LOC108430351,LOC103046559,LOC108265487,LOC105014311 coding upstream 28715 27076367 ~ 27118700 (+)
cdc45 cdc45,LOC107699634,LOC107670985 coding upstream 88073 27050304 ~ 27059342 (+)
ciao1 ciao1,LOC106579887,LOC107714582 coding upstream 105877 27036124 ~ 27041538 (+)
LOC103022969 LOC108430342 coding upstream 128438 26974932 ~ 27018977 (+)
LOC103042580 NA coding downstream 91997 27670060 ~ 27679690 (+)
LOC111192709 NA coding downstream 111649 27689712 ~ 27708708 (+)
LOC111192710 NA coding downstream 130652 27708715 ~ 27717784 (+)
LOC103029698 NA coding downstream 142580 27720643 ~ 27731685 (+)
LOC103041042 lipg coding downstream 184548 27762611 ~ 27776489 (+)
G54693 ufd1l,LOC106585051,LOC106580431 non-coding upstream 98332 27046146 ~ 27049083 (+)
G54686 es1,LOC108430344,LOC107553036,LOC107671040,LOC107552194,LOC107714552 non-coding upstream 127221 27019061 ~ 27020194 (+)
G54683 NA non-coding upstream 176533 26969363 ~ 26970882 (+)
G54673 NA non-coding upstream 179228 26935930 ~ 26968187 (+)
G54680 NA non-coding upstream 200540 26945812 ~ 26946875 (+)
LOC111192651 NA non-coding downstream 139912 27717975 ~ 27719836 (+)
G54929 NA non-coding downstream 193461 27771524 ~ 27802691 (+)
G54938 NA non-coding downstream 210934 27788997 ~ 27796308 (+)
G54941 NA non-coding downstream 252044 27830107 ~ 27830766 (+)
G54969 NA non-coding downstream 382373 27960436 ~ 27960788 (+)
G54690 tmem127,LOC107552193,LOC106579884 other upstream 112477 27032835 ~ 27034938 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other upstream 124524 27020244 ~ 27022891 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other upstream 174389 26962892 ~ 26973026 (+)
LOC103040153 cdc14b,LOC108265480 other upstream 595845 26537052 ~ 26551570 (+)
srp19 srp19 other upstream 1597921 25545992 ~ 25549494 (+)
LOC107197454 NA other downstream 85719 27663782 ~ 27668662 (+)
G54841 NA other downstream 125709 27703772 ~ 27712578 (+)
ipo11 ipo11 other downstream 236152 27814215 ~ 27938389 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other downstream 1068001 28646064 ~ 28656818 (+)
G55218 NA other downstream 1175967 28754030 ~ 28754817 (+)

Expression


Co-expression Network