G54735


Basic Information

Item Value
gene id G54735
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27156946 ~ 27157648 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73799
GAGAAAACATTATAAAGACAGATGGGAGCTGGTGATGGGCGTGCTTTCACGTTTCCCACTAGAACCTTCATAGATCGTACAGTTTTGtgattagatttggactctttggccgtttttctgctagaactgcgcactctctccgcttttagactctttggcccgcttttctgcgctagaaacgcgcaccctctccgcttttagactctttggcctgttttttgcgctagaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73799 True 231 lncRNA 0.47 2 27156946 27157648

Neighbor

gene id symbol gene type direction distance location
sept5 sept5,LOC107713038,LOC102226618 coding upstream 15330 27120811 ~ 27141616 (+)
LOC103046559 LOC108430351,LOC103046559,LOC108265487,LOC105014311 coding upstream 38246 27076367 ~ 27118700 (+)
cdc45 cdc45,LOC107699634,LOC107670985 coding upstream 97604 27050304 ~ 27059342 (+)
ciao1 ciao1,LOC106579887,LOC107714582 coding upstream 115408 27036124 ~ 27041538 (+)
LOC103022969 LOC108430342 coding upstream 137969 26974932 ~ 27018977 (+)
dhx37 dhx37 coding downstream 6619 27164267 ~ 27181242 (+)
LOC103044927 LOC108430355 coding downstream 30746 27188394 ~ 27206043 (+)
cux2 cux2 coding downstream 102234 27259882 ~ 27457190 (+)
mtmr3 mtmr3 coding downstream 321771 27479419 ~ 27504808 (+)
LOC103042580 NA coding downstream 512412 27670060 ~ 27679690 (+)
G54693 ufd1l,LOC106585051,LOC106580431 non-coding upstream 107863 27046146 ~ 27049083 (+)
G54686 es1,LOC108430344,LOC107553036,LOC107671040,LOC107552194,LOC107714552 non-coding upstream 136752 27019061 ~ 27020194 (+)
G54683 NA non-coding upstream 186064 26969363 ~ 26970882 (+)
G54673 NA non-coding upstream 188759 26935930 ~ 26968187 (+)
G54747 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007 non-coding downstream 68802 27226450 ~ 27236132 (+)
LOC111192651 NA non-coding downstream 560327 27717975 ~ 27719836 (+)
G54929 NA non-coding downstream 613876 27771524 ~ 27802691 (+)
G54938 NA non-coding downstream 631349 27788997 ~ 27796308 (+)
G54941 NA non-coding downstream 672459 27830107 ~ 27830766 (+)
G54690 tmem127,LOC107552193,LOC106579884 other upstream 122008 27032835 ~ 27034938 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other upstream 134055 27020244 ~ 27022891 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other upstream 183920 26962892 ~ 26973026 (+)
LOC103040153 cdc14b,LOC108265480 other upstream 605376 26537052 ~ 26551570 (+)
srp19 srp19 other upstream 1607452 25545992 ~ 25549494 (+)
LOC103030972 LOC108430356 other downstream 53654 27211302 ~ 27222867 (+)
LOC107197454 NA other downstream 506134 27663782 ~ 27668662 (+)
G54841 NA other downstream 546124 27703772 ~ 27712578 (+)
ipo11 ipo11 other downstream 656567 27814215 ~ 27938389 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other downstream 1488416 28646064 ~ 28656818 (+)

Expression


Co-expression Network