G54747 (pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007)


Basic Information

Item Value
gene id G54747
gene name pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27226450 ~ 27236132 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73816
CAGAAACAGATGCCACTTGTTTGCTCTGATCACACTCactaaatgtgttaaaaatggTGACACTTTTAACACTTTCCTTTTTAAAGTGTAAACACCAAGGTACTGACAGTACACATGGTTTGGATCTCACTGTTACAAGTACAGAACGACagggtttatatatattaaaaaaaacatagacgAACCCAAAGAACTCAATAGACGAACCAAGGATTTTTCccatataattaaaacaatggCAATGGTGCTACCCAGGTCCACCTAGTGCTATCTAGTCCCCCTAAGATAGATTATACAGCCTGCCTTGTGTTAATTACGCAGTAAAGTGTAAATATTAGcacacccaaaaacacagaCAGCTACAGCCAGAAAGAACAATTCTAACTCCAGAATATTGGCCCACCATAGCAATACTGCTAAACCACCACAGTTCCCACAATATTATACAAAATTAATCAGCTAATGCCGTGCGAGTTCATTCATTGCAAGGTTATATATACACTTGGTAATTAATTAGTAAATATAGGCTCAGCCGTTTGGTTGCCTGGTCTGCCACTAAGCACAGGATCTGTGATCCCTGtaccataaatataaatacacataccATCACACTCTTAGTAGACAtggaattttattttttgttaatttgtctGTAACAAACCATCTACAAGCAAACATTTACTAGCAATTTCAGAAACAAAGACTTTTAATTGTGCATAACATGTCCTTTTGTTCACTTAAGCAGAACTGCAAATGGCACCTAAACAGTTCAACAACATGTAATTTAGCAAGCAGCAAttgtttcatttttagttttctggTGTACTAAAGAACCTCTTGAGAATCTATCAATCAAATCTATCAAGTTCTTGACTAAATCCACAGTATGAGCTTGCAGGGTTCATCAAACATGCAAAGCAATTCAGACAGTTCAATTTATGAAATTGACCTTCCTCAGAAGTACTCAGAAACTGTTTAATACAAGGATTGTTGGCTGTGACATATTCTACCTGTGCTGAAGTGTCTAGTTCAATTCTTGAAAGGTCACCAACTCTAAAAACATTAGCTGTGTCTGTTCGTCTGCCAGCCTACTCATGCTGCTGAGCATGCTCTTCATTTTTTAGATTTGTACTGTTCCTGAATTTTTAACAAAGAGAAATGGAGCAGATTAAAGTATTATAGATTAGACAGCATCTGGCTGCAATTCATTCTTTCTACTGGCTCACCTAACTAAGGGCAAAGGCAGATCATATAAAGACTGGTCTTGTAAGCAAATGTCAAAAATACGGTAAGGTTTTCCATTTTATTAATGCTCCAAAACTTTACCTATGGTACTGGACATTggattttttaatagtttttaagtTTGGATCAAATTTAGATGTTCGTTCCTCTTTGCAGGCTTAAGAGCATGCTAAAAAGCTGTGTATTTTAGGAGATTAGCATGCAGGTTCAGATGGCTAAACACCAGAACACGTGATAGGCTTAAAATAATTACTCGTTAAAAagtacaacagaaaaaaaaaatgctacaagTAGAGAAACGGGATTGGTTGATATGGAGAAGGCCTCTAGTCCGCCCCTGTGTGCGATTAGACTTTGGACGAACACTGCCCATGGCAACTATCCAGCACACACTGGCTCCCTCCCTGTCCATTAAAATTCCCTTGGTGACCAGACACAGCATGGCCCTTGGCACTCTACTGGAACGCAGAACATGGAGCACATGGACATGGTGTTACTCTCGTACTCTGCGGAATTGTTTTCATACATCATGGTGTTCCTTGAGAGCAAGATTAAGTTCTCTTGTATCATGAAAAacgacaaaacataaaaaaaaagaaagaaagccaaaaaaaagaaaaaaaaaaaaaaacacaatacagctGAACTGTATTGTTTAGCATTCAGTGTTTAAACAGTGATTCATTTCCCACCAGTGGCAGTAATCCAGTGAAGTTAACAATAACCAAACTCTCAGCATGAGCAGTTAATCAAGCCCTGCTTCTACCAGCAAGGATTATGTCTTATTCATGCCACCTCTCAGCAggcactgctgtgtctgcttCATTACCAGAGTTAAATAAGAGACAGAAACTGAAATATACGTCTTACCTGTCACTAAGGACAGAGCCCTCTGCCTCCGGGGGAGCAATTGAAAGCTGGAAGGGGGTATTAAAATAGTGCTGTTGCTCATCGGACCTGTGAACTACTTCTCCTCCTCGAACAACCAGGAAACCTGAGTCACCCAGGTTCGCTGTGTGAAGCCGATGGCTTTGTCTGTCCAGCACCACTATACAAGCTGTGCTGCTTCCTAGTAGAGGTACTTTGTTTTGAAGAAGCTCATAGTAGCTGGTGGTAAGGATCCCCACTGGGTTACTGGGTACAAAACGTCCCTCTTTCACCAGCCTCTCACATGTCCTCATTAATGTTGCAGAAAACTGTGAGGGGTCTACTCCGTAATCACGCCAACCACCAACACCATCAGCCACAcCTAGTACATCCGCAGATCTGTGTCTGGCAATGAAACAGGCGTCATCGCCGTAGCACATGCCTTTCTTAAAAATCCCCTTTCGGAAGTCCTTCCCGTACCCAAAGCTCGCCGACACCAGGCTGTAATCGCGGCTGTCGGTCTGAGAGAGGCCGCCGATCACAGCCCTGGCGACCAGTCTACCGTAGGACAGTACGGACAACATCACCCGAGCGGCAGCAGCCCCACCTGAACCGACCTGCTCCCGGGGCTCGCCTACCTACTGACCACGACCACAGTCCACACGGCTCAGTCCCGCAGCTCGCGCTGGATAATAACACAGTGTCCTGATCAGGAGCGCGAGCGGAGCGTCCCAGTAATAACCTCCACCGCAAAGCAACCTCCACAGACAAGACGAtcctcctcttctctttctcagTCAGAAACACTTTAACCTACATACTCTAACACTCCAGCGGTGTCCCCAGTCCTCTAAACGCCTCCAAACACCGAGAAAGCCGCGCTGAGCTCCATCGCCCCGGTGCTCCGTGCTCGGTCGGTGTGC

Function

symbol description
pptc7a Predicted to enable metal ion binding activity; protein serine phosphatase activity; and protein threonine phosphatase activity. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Orthologous to human PPTC7 (protein phosphatase targeting COQ7).

NR:

description
protein phosphatase PTC7 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73816 True 3035 lncRNA 0.43 3 27226450 27236132

Neighbor

gene id symbol gene type direction distance location
LOC103044927 LOC108430355 coding upstream 20407 27188394 ~ 27206043 (+)
dhx37 dhx37 coding upstream 45208 27164267 ~ 27181242 (+)
gp1bb gp1bb coding upstream 65884 27155544 ~ 27160566 (+)
sept5 sept5,LOC107713038,LOC102226618 coding upstream 84834 27120811 ~ 27141616 (+)
LOC103046559 LOC108430351,LOC103046559,LOC108265487,LOC105014311 coding upstream 107750 27076367 ~ 27118700 (+)
cux2 cux2 coding downstream 23750 27259882 ~ 27457190 (+)
mtmr3 mtmr3 coding downstream 243287 27479419 ~ 27504808 (+)
LOC103042580 NA coding downstream 433928 27670060 ~ 27679690 (+)
LOC111192709 NA coding downstream 453580 27689712 ~ 27708708 (+)
LOC111192710 NA coding downstream 472583 27708715 ~ 27717784 (+)
G54735 NA non-coding upstream 68802 27156946 ~ 27157648 (+)
G54693 ufd1l,LOC106585051,LOC106580431 non-coding upstream 177367 27046146 ~ 27049083 (+)
G54686 es1,LOC108430344,LOC107553036,LOC107671040,LOC107552194,LOC107714552 non-coding upstream 206256 27019061 ~ 27020194 (+)
G54683 NA non-coding upstream 255568 26969363 ~ 26970882 (+)
G54673 NA non-coding upstream 258263 26935930 ~ 26968187 (+)
LOC111192651 NA non-coding downstream 481843 27717975 ~ 27719836 (+)
G54929 NA non-coding downstream 535392 27771524 ~ 27802691 (+)
G54938 NA non-coding downstream 552865 27788997 ~ 27796308 (+)
G54941 NA non-coding downstream 593975 27830107 ~ 27830766 (+)
G54969 NA non-coding downstream 724304 27960436 ~ 27960788 (+)
LOC103030972 LOC108430356 other upstream 3583 27211302 ~ 27222867 (+)
G54690 tmem127,LOC107552193,LOC106579884 other upstream 191512 27032835 ~ 27034938 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other upstream 203559 27020244 ~ 27022891 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other upstream 253424 26962892 ~ 26973026 (+)
LOC103040153 cdc14b,LOC108265480 other upstream 674880 26537052 ~ 26551570 (+)
LOC107197454 NA other downstream 427650 27663782 ~ 27668662 (+)
G54841 NA other downstream 467640 27703772 ~ 27712578 (+)
ipo11 ipo11 other downstream 578083 27814215 ~ 27938389 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other downstream 1409932 28646064 ~ 28656818 (+)
G55218 NA other downstream 1517898 28754030 ~ 28754817 (+)

Expression


Co-expression Network