G55047


Basic Information

Item Value
gene id G55047
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28210296 ~ 28210513 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU74221
cccgttggacagataaaaaacagtgatcacactcccgccgactgcgctcatgcagtggctctctctatttaaatgaataggatgcgctgtgttggtgccgcgccatttgcgtagcgcgctgcgggagggatcgtcgatcctctttttgacttcgatactcagaccatgacctcatttcgattcgatttcgataaaatatcgagatcgtgacaccccta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74221 True 218 lncRNA 0.50 1 28210296 28210513

Neighbor

gene id symbol gene type direction distance location
fbxo4 fbxo4 coding upstream 45694 28158310 ~ 28164602 (+)
c6h5orf51 cunh5orf51,si:dkey-46a10.3,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 coding upstream 52737 28153462 ~ 28157559 (+)
rgs7bp rgs7bp,LOC107565984,LOC107667524 coding upstream 186693 28015206 ~ 28023603 (+)
LOC111192652 rnf180 coding upstream 196531 27999387 ~ 28013765 (+)
LOC111192712 NA coding upstream 431135 27778146 ~ 27779161 (+)
ghr LOC108412734 coding downstream 2184 28212697 ~ 28247485 (+)
znf131 znf131,LOC107600021 coding downstream 61986 28272499 ~ 28283827 (+)
nim1k nim1k,LOC108412738,LOC107602863,LOC107667564,LOC107686411,LOC107599996 coding downstream 74856 28285369 ~ 28299831 (+)
LOC103037168 LOC108412740 coding downstream 93815 28304328 ~ 28313589 (+)
gadd45g gadd45g,gadd45ga,LOC108412735,LOC107724875,LOC107686412 coding downstream 109355 28319868 ~ 28322245 (+)
G55011 NA non-coding upstream 42784 28165171 ~ 28167512 (+)
G55004 oxct1a,oxct1,LOC108414057,LOC107711896,LOC107667551,LOC107600019,LOC107686394 non-coding upstream 82390 28126754 ~ 28127906 (+)
G54991 NA non-coding upstream 113003 28032891 ~ 28097293 (+)
G54969 NA non-coding upstream 249508 27960436 ~ 27960788 (+)
G54941 NA non-coding upstream 379530 27830107 ~ 27830766 (+)
G55053 NA non-coding downstream 47852 28258365 ~ 28262006 (+)
G55061 NA non-coding downstream 89356 28299869 ~ 28302082 (+)
G55103 NA non-coding downstream 168396 28378909 ~ 28379388 (+)
G55114 NA non-coding downstream 243000 28453513 ~ 28508501 (+)
G55115 NA non-coding downstream 260483 28470996 ~ 28482177 (+)
ipo11 ipo11 other upstream 271907 27814215 ~ 27938389 (+)
G54841 NA other upstream 497718 27703772 ~ 27712578 (+)
LOC107197454 NA other upstream 541634 27663782 ~ 27668662 (+)
LOC103030972 LOC108430356 other upstream 987429 27211302 ~ 27222867 (+)
G54690 tmem127,LOC107552193,LOC106579884 other upstream 1175358 27032835 ~ 27034938 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other downstream 435551 28646064 ~ 28656818 (+)
G55218 NA other downstream 543517 28754030 ~ 28754817 (+)
G55502 NA other downstream 2136503 30347016 ~ 30625046 (+)
G55532 cgnl1 other downstream 2318349 30528862 ~ 30550061 (+)
G55831 LOC107691557,LOC108411168 other downstream 3710307 31920820 ~ 31924095 (+)

Expression


Co-expression Network