G55061


Basic Information

Item Value
gene id G55061
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28299869 ~ 28302082 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU74243
CAACACAGGACAACATGACACATTTCAGCACTAAAGactcatttttaaatttttaaatctattttttattgttaattttggAAAAATAGAGACCATTTTAAGCCCCAATCATAGGGGACACTCTCACAGTCATTATGTAATATAATGGGGGGAAATATGATGTAAACACTCTCGCTATTAATCAAATCTGGTTAAACTCCTGCAGGCTGAATGGACATGGCTGGATTGCAGAAAATCTAATTATAGAATGTCAAGCTCTAACTGTGCTATAAATACAAGGAATTGTATTTTAGCATGTACAATTTTggataaaatatgtatttttaatctgTAAAATTCATGGCTCTtccccattttttattttcaaactacacatttaattacacatttgtaGACGgtcattatataataataataataattattattattataaaatatagcatATATTCCACTGACAATTTAACGACCATATGTTAAAATTTAATCTGTAATAAACCAAATACTTTCTTCTGTCAAATGAATTTGGAACAGCCATGAATTCTTACTGAAATTGCACATGCTACAAAATACTGCCTAGAAGGGAGTGTTAagatattttagtatttatgtgttagaatgtgttttttaagtgCGCTTCTGAAAATCTTATTTCTGAAACTGAGAAACTGTGGATTAAAAGCTGAAGGGCTAGCCGTAGTAGCGCAATGAATGTTCCTTTTAAACACGCACAGACACTTCTACTGAGCCTGCTGGTGGAGTGCCATTTATTTAGCTTACGCACAGTAAGTTCCATATATTCTCTTGTTATGACTGATGTCAAAAATGAAGCTTAtcactgtagtttttttttcactttctggtaaaactgtttgttttatcTTCTCAGGCGTTCACAGAGGTCAGTTCTCCAGTGGCTGAATTAAGGCTAACCTGCTAAAATTGCATGCTAGTCACTTCACAAAATCTAATCACTAAAGTTCACTTAAAACACTGCTTTTAAGGATAACTTAAACTGGGCAGTTATTTTGAACCAGTTTTTCAGAAAATCTTGATAACTATGGTGCcaaataaaaacagctgttttgTCTGCTAGCTGAACAGAAACGAAATGAAATGGAGCACGCTAGAGTGTCTTAAAAGCAATAATATAACCCAACCAGCCTGCGTGTCTGAGAAAATAATCACGCTACacttcattttcacacaattacaccagcagaaatataaaaaatgaggtGTTTAGTTAGGTCTTTGCAGTCATGCTTTATCTGTTTTAGCATGTGCTACTCTGGATCTGGCCACTAGTGTGTGTAGTTCTTCCCCTCTGTCTGTAAGCTTTGCCTGtggctgaaaacaaaaaaactccaCTATTTTCATATCAGGAAAGGAGCATATGTGAGATTGTGTTTTTAGGTTTGGTATACCTCTTCTGTTATTTGAGATATTCCACCAGTACAACTTCTTTTTTGTCCCACTGTGTGAACTGAATATCAGAAATATTTGTAACAATATTTGATTAGTATTATTGCtagtagattttatttattttacatactacATATCTGACTCATGTTTTGCCTAAAAGAAAATCACATTATAAACAAAAACTGGCATCATAAAGACCATTTCTAAAAGCATAAGCATGGCTATATAAATTGTAGTCAGTGCttcttattaatgtttaaaatcagCATATTTTGCAGACAAAATCATGTTTACACCATTTAAGGTCACATACACCAATCACTCATGATAATAATATTGTGTTCCTTTGGTCATCAAAACAGCTTTGACCTGTCAGGATGACATCTGAGTAGTATCTGGTCCCAAGACATTAGCTGCAAGGACTTTAATTCCTATAGGTGATATGTCCACCCCTTGACTGGTGGAAATAGTTAATCAATGTTCTGTACTTCacctggttttaatgttatggctgatctttATTTATGGTTATGGTGGGAAATAAATGCACTGTACTGGTGgaatatttcagtgtgaaagcaGCACAGAAGGCCTTCAGTAGATTGTGGATGCCTTTCTCTGCAGAATCACTGTTGTATGTTGGTTTGTATGTGTGTCGTCATGTTCAGTCCTAAAGATAGAGAAGCTGCTCAGCAGAAACACAATCATGTTAGAGATTAGCAGGGTCAGCAGAGAtaagacacattttaaaaagtgcactttagCAACACGACAATGACTTTCATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74243 True 2214 lncRNA 0.34 1 28299869 28302082

Neighbor

gene id symbol gene type direction distance location
nim1k nim1k,LOC108412738,LOC107602863,LOC107667564,LOC107686411,LOC107599996 coding upstream 38 28285369 ~ 28299831 (+)
znf131 znf131,LOC107600021 coding upstream 16042 28272499 ~ 28283827 (+)
ghr LOC108412734 coding upstream 52384 28212697 ~ 28247485 (+)
fbxo4 fbxo4 coding upstream 135267 28158310 ~ 28164602 (+)
c6h5orf51 cunh5orf51,si:dkey-46a10.3,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 coding upstream 142310 28153462 ~ 28157559 (+)
LOC103037168 LOC108412740 coding downstream 2246 28304328 ~ 28313589 (+)
gadd45g gadd45g,gadd45ga,LOC108412735,LOC107724875,LOC107686412 coding downstream 17786 28319868 ~ 28322245 (+)
LOC107197569 NA coding downstream 135685 28437767 ~ 28443647 (+)
kdm2b kdm2b,kdm2ba,LOC107712479,LOC107687979 coding downstream 152850 28454932 ~ 28475661 (+)
anapc5 anapc5,LOC107687977,LOC107703168 coding downstream 191494 28493576 ~ 28501784 (+)
G55053 NA non-coding upstream 37863 28258365 ~ 28262006 (+)
G55047 NA non-coding upstream 89356 28210296 ~ 28210513 (+)
G55011 NA non-coding upstream 132357 28165171 ~ 28167512 (+)
G55004 oxct1a,oxct1,LOC108414057,LOC107711896,LOC107667551,LOC107600019,LOC107686394 non-coding upstream 171963 28126754 ~ 28127906 (+)
G54991 NA non-coding upstream 202576 28032891 ~ 28097293 (+)
G55103 NA non-coding downstream 76827 28378909 ~ 28379388 (+)
G55114 NA non-coding downstream 151431 28453513 ~ 28508501 (+)
G55115 NA non-coding downstream 168914 28470996 ~ 28482177 (+)
G55111 NA non-coding downstream 176371 28478453 ~ 28480038 (+)
G55124 NA non-coding downstream 181971 28484053 ~ 28485004 (+)
ipo11 ipo11 other upstream 361480 27814215 ~ 27938389 (+)
G54841 NA other upstream 587291 27703772 ~ 27712578 (+)
LOC107197454 NA other upstream 631207 27663782 ~ 27668662 (+)
LOC103030972 LOC108430356 other upstream 1077002 27211302 ~ 27222867 (+)
G54690 tmem127,LOC107552193,LOC106579884 other upstream 1264931 27032835 ~ 27034938 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other downstream 343982 28646064 ~ 28656818 (+)
G55218 NA other downstream 451948 28754030 ~ 28754817 (+)
G55502 NA other downstream 2044934 30347016 ~ 30625046 (+)
G55532 cgnl1 other downstream 2226780 30528862 ~ 30550061 (+)
G55831 LOC107691557,LOC108411168 other downstream 3618738 31920820 ~ 31924095 (+)

Expression


Co-expression Network