G55103


Basic Information

Item Value
gene id G55103
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28378909 ~ 28379388 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU74289
tgtcacatcctggtctcgtctcgtgtctgtgtgtcttccccacgtgacctgtgctcccctgtgtctcccgtctcagtacttttccacctgtttctcatttgttgctccgccccttccccaggtgtttctaattatagtgtttcctgtttctttaaatagccctcctctgccactttgtctccgtcggtctttgcactaacccctgttgtttgtctctccgtgtctctttgtgatttcagccttagccctagccctagttccttgtttacatcttcttgtttcttgttccctttagttccctgcttagtttatttatccctgtctagtttagcctcttgttagttttccttgtatatatccctgccttgtttagtattgtatttattcagtccctcgtttgtttctttgtttatttactcccagtttattttgctatttattatctcttgttggtttagtttatgttctctggtttctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74289 True 480 lncRNA 0.43 1 28378909 28379388

Neighbor

gene id symbol gene type direction distance location
gadd45g gadd45g,gadd45ga,LOC108412735,LOC107724875,LOC107686412 coding upstream 56664 28319868 ~ 28322245 (+)
LOC103037168 LOC108412740 coding upstream 65320 28304328 ~ 28313589 (+)
nim1k nim1k,LOC108412738,LOC107602863,LOC107667564,LOC107686411,LOC107599996 coding upstream 79078 28285369 ~ 28299831 (+)
znf131 znf131,LOC107600021 coding upstream 95082 28272499 ~ 28283827 (+)
ghr LOC108412734 coding upstream 131424 28212697 ~ 28247485 (+)
LOC107197569 NA coding downstream 58379 28437767 ~ 28443647 (+)
kdm2b kdm2b,kdm2ba,LOC107712479,LOC107687979 coding downstream 75544 28454932 ~ 28475661 (+)
anapc5 anapc5,LOC107687977,LOC107703168 coding downstream 114188 28493576 ~ 28501784 (+)
gpx8 gpx8 coding downstream 123964 28503352 ~ 28506229 (+)
LOC103031919 ggt1,LOC105891568,LOC107753164,LOC107550935,LOC107554426,LOC107712477,LOC107703144 coding downstream 222682 28602070 ~ 28616445 (+)
G55061 NA non-coding upstream 76827 28299869 ~ 28302082 (+)
G55053 NA non-coding upstream 116903 28258365 ~ 28262006 (+)
G55047 NA non-coding upstream 168396 28210296 ~ 28210513 (+)
G55011 NA non-coding upstream 211397 28165171 ~ 28167512 (+)
G55004 oxct1a,oxct1,LOC108414057,LOC107711896,LOC107667551,LOC107600019,LOC107686394 non-coding upstream 251003 28126754 ~ 28127906 (+)
G55114 NA non-coding downstream 74125 28453513 ~ 28508501 (+)
G55115 NA non-coding downstream 91608 28470996 ~ 28482177 (+)
G55111 NA non-coding downstream 99065 28478453 ~ 28480038 (+)
G55124 NA non-coding downstream 104665 28484053 ~ 28485004 (+)
G55132 NA non-coding downstream 141867 28521255 ~ 28521515 (+)
ipo11 ipo11 other upstream 440520 27814215 ~ 27938389 (+)
G54841 NA other upstream 666331 27703772 ~ 27712578 (+)
LOC107197454 NA other upstream 710247 27663782 ~ 27668662 (+)
LOC103030972 LOC108430356 other upstream 1156042 27211302 ~ 27222867 (+)
G54690 tmem127,LOC107552193,LOC106579884 other upstream 1343971 27032835 ~ 27034938 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other downstream 266676 28646064 ~ 28656818 (+)
G55218 NA other downstream 374642 28754030 ~ 28754817 (+)
G55502 NA other downstream 1967628 30347016 ~ 30625046 (+)
G55532 cgnl1 other downstream 2149474 30528862 ~ 30550061 (+)
G55831 LOC107691557,LOC108411168 other downstream 3541432 31920820 ~ 31924095 (+)

Expression


Co-expression Network