G55236


Basic Information

Item Value
gene id G55236
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28827885 ~ 28829712 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU74483
cccacctTCAACCCTCAGTTTTTCCCAGTATCAGTTTTGTTCGCAGCGATTAACTTTACCCAGATCTGTGGGACAGGCCTTCAGATCAACAGAACAAATCAACAGAGATTTCAGAACAGAGCGATGCATTTAGTCGACAACGTAAACAACCAATGCTTAAAACATAACGTGGATGTTAGAAAAAaaggtattaaattcacattttaaatcCTCTCATACAGGGGAATACATTAGACCATGACAGCACCaactgcccacacacacacaaacacacccacagacgcaaacacacacacacacacacacacacacgcacacaaacgcACGCACATTCTCACAGAGCCTCCAGCATTATTAGTAGCCTGTCATACACATACACTTTCTTcaacaacacacaaaacaaacacatttcaagttcaaaaaaagagaaaaagccaAAAGgtcaaaatattacatttaaagaaacaaagaccgtcctgtgtgtgtgtgttaaagacCGTcttGTGGGTGTGTTTGGACACTCACTCCAAGACTGTGGCTAAACCCAGTGCTGGGGGCAGGGCTTGCGGCGCTAATGTAGCTGCTGACTGTTGATTCCTGACTGGCCGTCCCATAAAGTTCTGCCATTGGTCCTGGGCTGCTGGTGCTAAGGAAGCCAGCGGAACGAGAGGGGGCAGAACCTACAGAAAACAGAGATAGACTGAATAAATGAGCATTGGCAGATCTTTCATacatataatttaaatgtaaataaacaataataaaaatatacatataaatagaatATAAAGAATCCAgaatataacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74483 True 808 lncRNA 0.41 2 28827885 28829712

Neighbor

gene id symbol gene type direction distance location
LOC103028136 NA coding upstream 33226 28790400 ~ 28794659 (+)
LOC103026907 NA coding upstream 40502 28775630 ~ 28787383 (+)
c6h12orf43 NA coding upstream 94464 28729414 ~ 28733421 (+)
unc119b unc119b,unc119.1,LOC107753165,LOC107712459,LOC107550938,LOC107687994 coding upstream 99878 28716975 ~ 28728007 (+)
mlec mlec,LOC107687973,LOC107554429,LOC107703166 coding upstream 113894 28703345 ~ 28713991 (+)
LOC103025277 LOC108413761 coding downstream 56758 28886470 ~ 28890378 (+)
crybb2 crybb2,LOC108265494,LOC108410876,LOC108234953 coding downstream 913437 29743149 ~ 29747471 (+)
lsm1 lsm1,LOC107571959,LOC107548281 coding downstream 1134362 29964074 ~ 29966667 (+)
LOC103046047 LOC107756834,LOC107548280,LOC107691567,LOC107702864 coding downstream 1139038 29968750 ~ 30061365 (+)
star star,LOC107691570 coding downstream 1234628 30064340 ~ 30068306 (+)
G55235 NA non-coding upstream 2242 28824191 ~ 28825643 (+)
G55232 NA non-coding upstream 20421 28805706 ~ 28807464 (+)
G55229 prkab1,prkab1b,LOC108412051,LOC107554438,LOC107753114,LOC107687987,LOC107703154 non-coding upstream 23614 28794853 ~ 28804271 (+)
G55211 LOC108412053 non-coding upstream 57787 28732314 ~ 28770098 (+)
G55214 LOC108412048 non-coding upstream 81394 28737597 ~ 28746491 (+)
G55282 NA non-coding downstream 44028 28873740 ~ 28874091 (+)
G55284 NA non-coding downstream 46298 28876010 ~ 28876242 (+)
G55321 NA non-coding downstream 387403 29217115 ~ 29284557 (+)
G55324 NA non-coding downstream 402790 29232502 ~ 29251704 (+)
G55334 NA non-coding downstream 693526 29523238 ~ 29523514 (+)
G55218 NA other upstream 73068 28754030 ~ 28754817 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other upstream 171067 28646064 ~ 28656818 (+)
ipo11 ipo11 other upstream 889496 27814215 ~ 27938389 (+)
G54841 NA other upstream 1115307 27703772 ~ 27712578 (+)
LOC107197454 NA other upstream 1159223 27663782 ~ 27668662 (+)
G55502 NA other downstream 1517304 30347016 ~ 30625046 (+)
G55532 cgnl1 other downstream 1699150 30528862 ~ 30550061 (+)
G55831 LOC107691557,LOC108411168 other downstream 3091108 31920820 ~ 31924095 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other downstream 3144969 31974681 ~ 31977419 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other downstream 3229697 32059409 ~ 32150570 (+)

Expression


Co-expression Network