G55315


Basic Information

Item Value
gene id G55315
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28986770 ~ 28987328 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU74581
ccgcaacgctccgacagaccataatattatgttgaagcacagcaagtacgtattactccgcgaggctcctgacaacggtagccgcaacgctccgacagaccataatattatgttgaagcacagcaagtacgtattactccgcgaggcttctgactataatagcgtgttgtgccgaattcggtgaataaaacggttttaaaacagagataaagattggataagtttcatttctggatgaagtgatttccagcgctgtttggatataactgtggattacaggagactggattgatggattctctttagtctggacgcgttttgaaggtaggacctgtggctgagcgcgggtgtgtgttcggggggtggcggcagtgaccggaggttaccccaggacaaaaggagagccttttattactggaaacatgcgctctgacgcagctctaattcatgaaacatacatcctacagtaaaagcacagttctggaatccggagagccagacggttcgaatggtgtatgacatgaccgcattcgatgaaatatggacgaacgataaacgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74581 True 559 lncRNA 0.47 1 28986770 28987328

Neighbor

gene id symbol gene type direction distance location
lzts1 lzts1 coding downstream 31547 28901548 ~ 28955223 (-)
LOC111192730 NA coding downstream 101883 28881879 ~ 28884887 (-)
msi1 msi1,LOC107687968 coding downstream 128610 28827738 ~ 28858160 (-)
tmem233 LOC107687986 coding downstream 172859 28806678 ~ 28813911 (-)
LOC103026611 prkab1,prkab1b,LOC108412051,LOC107554438,LOC107753114,LOC107687987,LOC107703154 coding downstream 183069 28794816 ~ 28803701 (-)
LOC103024952 LOC108412520 coding upstream 233227 29220555 ~ 29388554 (-)
LOC111192660 NA coding upstream 663100 29650428 ~ 29652090 (-)
LOC103024435 NA coding upstream 683039 29670367 ~ 29702656 (-)
LOC103023912 LOC108410873 coding upstream 744110 29731438 ~ 29738545 (-)
LOC103023281 NA coding upstream 761518 29748846 ~ 29756606 (-)
G55299 NA non-coding downstream 91232 28892275 ~ 28895538 (-)
G55281 NA non-coding downstream 113781 28872698 ~ 28872989 (-)
G55265 NA non-coding downstream 121219 28785898 ~ 28865551 (-)
G55267 NA non-coding downstream 193904 28792155 ~ 28792866 (-)
G55253 NA non-coding downstream 258786 28727612 ~ 28727984 (-)
G55317 NA non-coding upstream 43759 29031087 ~ 29031325 (-)
G55320 NA non-coding upstream 180639 29167967 ~ 29168282 (-)
G55332 NA non-coding upstream 463760 29451088 ~ 29451356 (-)
G55336 NA non-coding upstream 537325 29524653 ~ 29525127 (-)
G55387 NA non-coding upstream 658716 29646044 ~ 29727767 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other downstream 386260 28554727 ~ 28600510 (-)
LOC111192657 NA other downstream 562815 28417733 ~ 28423955 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other downstream 829321 28153421 ~ 28157449 (-)
LOC103039900 NA other downstream 943519 28026739 ~ 28043251 (-)
G54947 NA other downstream 1255691 27728711 ~ 27731079 (-)
kiaa1671 NA other upstream 756700 29744028 ~ 29840753 (-)
LOC103046862 LOC108410878 other upstream 909187 29896515 ~ 29934430 (-)
LOC103027498 LOC108411246,LOC106585447 other upstream 2648153 31635481 ~ 31690808 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other upstream 2744136 31731464 ~ 31740221 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other upstream 3784699 32772027 ~ 32802160 (-)

Expression


Co-expression Network