G55533


Basic Information

Item Value
gene id G55533
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 30529865 ~ 30530274 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU74887
CACCATCAGaaccatcacacacaccatcTTCATTTAAgcatcacacaccatcacacccataatcacacacacaaacacaccatctTCATATCAGCATCGCACATCATCAAAatcatcatcacacatcacctTTATATGAGCATCATACACCATCAGaaccatcacacacaccatcTTCATTTAAgcatcacacaccatcacacccataatcacacacacaaacacaccatctTCATATCAGCATCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74887 True 247 lncRNA 0.42 2 30529865 30530274

Neighbor

gene id symbol gene type direction distance location
LOC103040742 NA coding upstream 180244 30340579 ~ 30349621 (+)
LOC103040008 NA coding upstream 256744 30253550 ~ 30273121 (+)
LOC103041750 NA coding upstream 327659 30176593 ~ 30202206 (+)
LOC103042059 NA coding upstream 371969 30152436 ~ 30157896 (+)
LOC103042579 NA coding upstream 378794 30146964 ~ 30151071 (+)
LOC103026908 NA coding downstream 84042 30614316 ~ 30625382 (+)
LOC103026612 LOC108442518 coding downstream 129452 30659726 ~ 30749916 (+)
slc15a4 slc15a4,LOC107659270 coding downstream 317633 30847907 ~ 30939711 (+)
golga1 golga1 coding downstream 1165344 31695618 ~ 31728020 (+)
pop5 pop5 coding downstream 1297143 31827417 ~ 31830620 (+)
G55525 NA non-coding upstream 35190 30482911 ~ 30494675 (+)
G55507 NA non-coding upstream 99743 30426571 ~ 30430122 (+)
G55499 NA non-coding upstream 208173 30316400 ~ 30321692 (+)
G55449 sf3a1,LOC107550953,LOC107702803,LOC107575440,LOC107564451 non-coding upstream 395128 30133115 ~ 30134737 (+)
G55429 NA non-coding upstream 584142 29945437 ~ 29945723 (+)
G55537 NA non-coding downstream 68338 30598612 ~ 30601438 (+)
G55591 NA non-coding downstream 105310 30635584 ~ 30636198 (+)
G55605 NA non-coding downstream 229528 30759802 ~ 30760952 (+)
G55606 NA non-coding downstream 247641 30777915 ~ 30843345 (+)
G55698 NA non-coding downstream 938440 31468714 ~ 31469001 (+)
G55218 NA other upstream 1775048 28754030 ~ 28754817 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other upstream 1873047 28646064 ~ 28656818 (+)
ipo11 ipo11 other upstream 2591476 27814215 ~ 27938389 (+)
G54841 NA other upstream 2817287 27703772 ~ 27712578 (+)
LOC107197454 NA other upstream 2861203 27663782 ~ 27668662 (+)
G55831 LOC107691557,LOC108411168 other downstream 1390546 31920820 ~ 31924095 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other downstream 1444407 31974681 ~ 31977419 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other downstream 1529135 32059409 ~ 32150570 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other downstream 1652803 32183077 ~ 32217411 (+)
G56160 NA other downstream 2827940 33358214 ~ 33366012 (+)

Expression


Co-expression Network